Variant report

Variant	rs6469241
Chromosome Location	chr8:110153932-110153933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110142753..110145243-chr8:110152469..110155392,3	K562	blood:
2	chr8:110152356..110155299-chr8:110157172..110158953,2	K562	blood:
3	chr8:110152393..110154757-chr8:110241965..110244257,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10087444	0.90[ASN][1000 genomes]
rs10090944	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10505126	0.83[ASN][1000 genomes]
rs10955505	0.83[ASN][1000 genomes]
rs11778370	0.83[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12543246	0.83[ASN][1000 genomes]
rs12544197	0.82[CHB][hapmap];0.91[CHD][hapmap]
rs12680028	0.82[ASN][1000 genomes]
rs1380096	0.82[JPT][hapmap]
rs1380097	0.82[JPT][hapmap]
rs1458915	0.82[JPT][hapmap]
rs1458916	0.82[JPT][hapmap]
rs1458917	0.82[JPT][hapmap]
rs1458923	0.86[ASN][1000 genomes]
rs1531298	0.86[ASN][1000 genomes]
rs1548082	0.81[JPT][hapmap]
rs1548083	0.82[JPT][hapmap]
rs16892486	0.82[CHD][hapmap]
rs16892496	0.82[CHD][hapmap]
rs1947629	0.86[ASN][1000 genomes]
rs1993594	0.84[ASN][1000 genomes]
rs2125511	0.86[ASN][1000 genomes]
rs2125513	0.84[ASN][1000 genomes]
rs2168964	0.81[ASN][1000 genomes]
rs2926195	0.86[ASN][1000 genomes]
rs2926196	0.85[ASN][1000 genomes]
rs2926197	0.86[ASN][1000 genomes]
rs2926198	0.82[JPT][hapmap]
rs2926208	0.86[ASN][1000 genomes]
rs2926214	0.86[ASN][1000 genomes]
rs2926244	0.86[JPT][hapmap]
rs2926245	0.82[JPT][hapmap]
rs2926247	0.82[JPT][hapmap]
rs2926259	0.81[ASN][1000 genomes]
rs2926263	0.81[ASN][1000 genomes]
rs2926265	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2926269	0.83[ASN][1000 genomes]
rs2926277	0.83[ASN][1000 genomes]
rs2980565	0.82[JPT][hapmap]
rs2980589	0.86[ASN][1000 genomes]
rs2980591	0.86[ASN][1000 genomes]
rs2980602	0.84[ASN][1000 genomes]
rs2980603	0.82[JPT][hapmap]
rs2980606	0.84[ASN][1000 genomes]
rs2980611	0.83[ASN][1000 genomes]
rs2980619	0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2980620	0.83[ASN][1000 genomes]
rs2980621	0.83[ASN][1000 genomes]
rs2980623	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2980624	0.82[JPT][hapmap]
rs2980627	0.81[ASN][1000 genomes]
rs2980628	0.81[ASN][1000 genomes]
rs2980630	0.81[ASN][1000 genomes]
rs2980632	0.81[ASN][1000 genomes]
rs3925087	0.82[CHD][hapmap]
rs3925088	0.81[ASN][1000 genomes]
rs4129682	0.83[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.82[ASN][1000 genomes]
rs4236801	0.82[CHD][hapmap]
rs4236802	0.83[ASN][1000 genomes]
rs4301422	0.82[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4342559	0.83[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4446710	0.82[CHD][hapmap]
rs4546626	0.82[CHD][hapmap]
rs4734193	0.83[ASN][1000 genomes]
rs4734194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734206	0.87[ASN][1000 genomes]
rs4735091	0.81[ASN][1000 genomes]
rs4735092	0.83[CHB][hapmap]
rs4735093	0.83[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.83[MKK][hapmap]
rs4735094	0.83[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4735117	0.90[ASN][1000 genomes]
rs4735119	0.89[ASN][1000 genomes]
rs56247307	0.92[ASN][1000 genomes]
rs6469235	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469248	0.86[ASN][1000 genomes]
rs6469249	0.86[ASN][1000 genomes]
rs6996836	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7003376	0.92[ASN][1000 genomes]
rs7003806	0.92[ASN][1000 genomes]
rs7009169	0.93[ASN][1000 genomes]
rs7012304	0.93[ASN][1000 genomes]
rs720574	0.87[JPT][hapmap]
rs7819201	0.90[ASN][1000 genomes]
rs7821463	0.81[ASN][1000 genomes]
rs7832552	0.82[CHD][hapmap]
rs7839867	0.92[ASN][1000 genomes]
rs7840000	0.81[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6469241	NUDCD1	cis	cerebellum	SCAN
rs6469241	PKHD1L1	cis	lymphoblastoid	seeQTL
rs6469241	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110152000-110154000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:110152400-110154200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:110152600-110154000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:110152600-110154000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:110153000-110154000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr8:110153400-110158200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:110153400-110158400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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