Variant report

Variant	rs6471641
Chromosome Location	chr8:58623465-58623466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10957018	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4131858	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4374979	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4380930	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4532583	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4549756	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4593530	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4598240	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639502	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4738608	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7005279	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58615200-58624000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:58616600-58623600	Weak transcription	Fetal Heart	heart
3	chr8:58619200-58623600	Weak transcription	Fetal Brain Male	brain
4	chr8:58619200-58624000	Weak transcription	Fetal Brain Female	brain
5	chr8:58622600-58624000	Weak transcription	Left Ventricle	heart
6	chr8:58623000-58624000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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