Variant report

Variant	rs6472042
Chromosome Location	chr8:63604549-63604550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11989310	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1480195	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600538	0.85[ASN][1000 genomes]
rs16929381	0.83[EUR][1000 genomes]
rs16929414	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929425	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16929454	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34116232	0.89[ASN][1000 genomes]
rs4737608	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4737609	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4738995	0.81[EUR][1000 genomes]
rs4738996	0.81[EUR][1000 genomes]
rs4739000	0.89[ASN][1000 genomes]
rs56074674	0.81[EUR][1000 genomes]
rs56209195	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56254488	0.81[EUR][1000 genomes]
rs7008374	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs769042	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs931130	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63603400-63614400	Weak transcription	Fetal Brain Male	brain
2	chr8:63603400-63620000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:63603600-63605000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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