Variant report
| Variant | rs6473849 |
|---|---|
| Chromosome Location | chr8:54460873-54460874 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:54457371..54459608-chr8:54460405..54462056,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10093917 | 0.85[EUR][1000 genomes] |
| rs12114990 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1551906 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1551907 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1551908 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs16919316 | 0.96[ASN][1000 genomes] |
| rs16919325 | 0.96[ASN][1000 genomes] |
| rs1871093 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28414831 | 0.81[EUR][1000 genomes] |
| rs28448344 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28498249 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28679737 | 0.83[EUR][1000 genomes] |
| rs6473843 | 0.82[EUR][1000 genomes] |
| rs6983490 | 0.89[EUR][1000 genomes] |
| rs6987393 | 0.89[EUR][1000 genomes] |
| rs7004899 | 0.82[EUR][1000 genomes] |
| rs7008567 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7009706 | 0.85[EUR][1000 genomes] |
| rs7011096 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73680192 | 0.85[EUR][1000 genomes] |
| rs73680445 | 0.89[EUR][1000 genomes] |
| rs73680446 | 0.89[EUR][1000 genomes] |
| rs73682504 | 0.81[EUR][1000 genomes] |
| rs73682506 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752674 | chr8:54181147-54483747 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:54459400-54463800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
