Variant report

Variant	rs6474915
Chromosome Location	chr9:15415461-15415462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15415166..15416789-chr9:15420978..15423004,2	MCF-7	breast:
2	chr9:15414997..15416790-chr9:15421464..15423490,2	MCF-7	breast:
3	chr9:15414032..15416513-chr9:15421401..15423007,2	K562	blood:
4	chr9:15305088..15306661-chr9:15415103..15416933,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10081655	0.88[CHB][hapmap]
rs10115540	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs10117968	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10733292	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs10738392	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs10738393	0.88[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap]
rs10738395	0.81[CHB][hapmap];0.80[JPT][hapmap];0.83[MKK][hapmap];0.93[YRI][hapmap]
rs10738397	0.81[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap]
rs10756664	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs10756666	0.81[CHB][hapmap];0.80[JPT][hapmap];0.85[YRI][hapmap]
rs10962027	0.90[ASN][1000 genomes]
rs1123038	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs1397214	0.81[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap]
rs1397215	0.81[CHB][hapmap]
rs1567452	0.89[EUR][1000 genomes]
rs1976599	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs2175259	0.83[CEU][hapmap];0.88[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs2490867	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2665504	0.80[JPT][hapmap]
rs2737842	0.80[JPT][hapmap]
rs2777950	0.89[YRI][hapmap]
rs2805008	0.81[ASN][1000 genomes]
rs4741500	0.85[CHB][hapmap]
rs4741501	0.81[JPT][hapmap]
rs4741505	0.81[CHB][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap]
rs4741506	0.81[CHB][hapmap]
rs4741507	0.89[YRI][hapmap]
rs4741508	0.81[CHB][hapmap];0.89[YRI][hapmap]
rs6474916	0.88[CHB][hapmap]
rs6474918	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs7021042	0.93[YRI][hapmap]
rs7026910	0.81[JPT][hapmap]
rs7026970	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7042165	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs7046713	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7341830	0.90[ASN][1000 genomes]
rs7862428	0.89[YRI][hapmap]
rs907075	0.81[CHB][hapmap];0.80[JPT][hapmap];0.85[YRI][hapmap]
rs907076	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs9650682	0.81[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap]
rs9650683	0.81[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1030287	chr9:15332709-15458001	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1022227	chr9:15379786-15416659	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv831520	chr9:15404866-15444447	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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