Variant report

Variant	rs6474956
Chromosome Location	chr9:15715604-15715605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10119980	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10121391	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10217374	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1039812	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1039815	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1039816	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10732334	0.91[AMR][1000 genomes]
rs10733296	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10738407	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10756706	0.85[EUR][1000 genomes]
rs10810445	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10810447	0.91[AMR][1000 genomes]
rs12350267	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1355172	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1417974	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1417975	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1509311	0.85[EUR][1000 genomes]
rs1553727	0.85[EUR][1000 genomes]
rs1848583	0.85[EUR][1000 genomes]
rs1891208	0.91[AMR][1000 genomes]
rs1935225	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1964706	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1970496	0.83[AMR][1000 genomes]
rs202321	0.85[EUR][1000 genomes]
rs2055773	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2055774	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2089618	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2136354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2136357	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2175083	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2185664	0.91[AMR][1000 genomes]
rs2221706	0.82[EUR][1000 genomes]
rs2382531	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2382533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2382535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2382536	0.85[EUR][1000 genomes]
rs276440	0.85[EUR][1000 genomes]
rs276442	0.85[EUR][1000 genomes]
rs398117	0.85[EUR][1000 genomes]
rs398178	0.85[EUR][1000 genomes]
rs401393	0.85[EUR][1000 genomes]
rs4146292	0.91[AMR][1000 genomes]
rs4237140	0.85[EUR][1000 genomes]
rs4445326	0.85[EUR][1000 genomes]
rs4740623	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4741532	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4741533	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4741536	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4741537	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4741540	0.91[AMR][1000 genomes]
rs6474941	0.85[EUR][1000 genomes]
rs6474947	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6474949	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6474957	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6474961	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6474973	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7025247	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7035422	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7038920	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7847148	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7849159	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7859685	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7865193	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7865391	0.91[AMR][1000 genomes]
rs7866413	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7870315	0.85[EUR][1000 genomes]
rs7874094	0.91[AMR][1000 genomes]
rs9298734	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs958870	0.82[EUR][1000 genomes]
rs9919009	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15669000-15720800	Weak transcription	Gastric	stomach
2	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
3	chr9:15679800-15746800	Weak transcription	Ovary	ovary
4	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
5	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung
6	chr9:15691800-15717000	Weak transcription	Thymus	Thymus
7	chr9:15699600-15717400	Weak transcription	Fetal Stomach	stomach
8	chr9:15699600-15728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:15704000-15716600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:15704600-15719800	Weak transcription	Right Ventricle	heart
11	chr9:15712400-15719000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:15712600-15716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:15712600-15722600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:15715200-15717000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:15715200-15722800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
17	chr9:15715400-15716800	Weak transcription	NHDF-Ad	bronchial
18	chr9:15715600-15733800	Weak transcription	Brain Anterior Caudate	brain

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