Variant report

Variant	rs6475051
Chromosome Location	chr9:16420198-16420199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10511617	1.00[EUR][1000 genomes]
rs16934509	1.00[EUR][1000 genomes]
rs16934624	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934678	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6475055	1.00[EUR][1000 genomes]
rs7020739	1.00[EUR][1000 genomes]
rs7021318	1.00[EUR][1000 genomes]
rs7022640	1.00[EUR][1000 genomes]
rs7035219	1.00[AMR][1000 genomes]
rs7040533	1.00[EUR][1000 genomes]
rs7042654	1.00[EUR][1000 genomes]
rs73413306	1.00[EUR][1000 genomes]
rs73413310	1.00[EUR][1000 genomes]
rs73645960	1.00[EUR][1000 genomes]
rs7846746	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7864491	1.00[AMR][1000 genomes]
rs7867641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16414200-16421200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:16414400-16421600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:16414600-16421200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:16415200-16420800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:16415400-16425600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:16416200-16435400	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:16416400-16420800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:16417600-16420800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:16417600-16421000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:16417600-16421600	Weak transcription	Aorta	Aorta
11	chr9:16417800-16420800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:16417800-16421000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:16418000-16421400	Weak transcription	HSMMtube	muscle
14	chr9:16418000-16425200	Weak transcription	Fetal Kidney	kidney
15	chr9:16418000-16435600	Weak transcription	HUVEC	blood vessel
16	chr9:16418200-16427600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:16418200-16435800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:16418400-16421200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:16418400-16425200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:16418600-16421200	Weak transcription	A549	lung
21	chr9:16418800-16427400	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:16419200-16425400	Weak transcription	Fetal Lung	lung
23	chr9:16419400-16420800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:16419400-16421000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:16419400-16423400	Weak transcription	HSMM	muscle
26	chr9:16419400-16425200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:16419400-16425200	Weak transcription	Adipose Nuclei	Adipose
28	chr9:16419400-16436200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:16419600-16421000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:16419600-16421000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:16419600-16421000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:16419600-16421200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:16419600-16421200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:16419600-16421200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr9:16419600-16421600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:16419600-16421600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:16419600-16421600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:16419600-16421600	Weak transcription	Esophagus	oesophagus
39	chr9:16419600-16421600	Weak transcription	Fetal Stomach	stomach
40	chr9:16419600-16421600	Weak transcription	Ovary	ovary
41	chr9:16419600-16421800	Weak transcription	Placenta	Placenta
42	chr9:16419600-16425200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:16419600-16425400	Weak transcription	NHLF	lung
44	chr9:16419600-16425400	Weak transcription	Osteobl	bone
45	chr9:16419600-16435200	Weak transcription	Fetal Intestine Large	intestine
46	chr9:16419600-16435400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:16419600-16435400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr9:16419800-16421000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:16419800-16421600	Weak transcription	NHDF-Ad	bronchial
50	chr9:16419800-16422200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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