Variant report

Variant	rs6475175
Chromosome Location	chr9:17829896-17829897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10738491	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963295	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10963299	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12380227	0.86[ASN][1000 genomes]
rs16923365	0.81[ASN][1000 genomes]
rs16935845	1.00[CEU][hapmap]
rs16935846	1.00[CEU][hapmap]
rs16935984	0.81[ASN][1000 genomes]
rs35911294	0.81[ASN][1000 genomes]
rs4284123	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4382571	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4415416	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4430174	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4477127	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4481712	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4531142	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4629969	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4642745	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4961448	0.86[ASN][1000 genomes]
rs61551917	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6475179	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6475180	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7024967	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73645334	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73645339	0.86[ASN][1000 genomes]
rs7847592	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7867642	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7871893	0.81[ASN][1000 genomes]
rs7873468	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2761507	chr9:17810983-17901307	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17824800-17830000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:17825200-17830000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:17825200-17830000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:17825600-17832000	Weak transcription	Aorta	Aorta
5	chr9:17827200-17832200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:17827400-17830000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:17829600-17830600	Enhancers	Right Ventricle	heart
8	chr9:17829600-17830800	Enhancers	Fetal Heart	heart
9	chr9:17829800-17830200	Enhancers	Left Ventricle	heart
10	chr9:17829800-17830400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:17829800-17830400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:17829800-17830400	Enhancers	Placenta	Placenta
13	chr9:17829800-17830600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:17829800-17830600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:17829800-17830600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:17829800-17830800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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