Variant report

Variant	rs6479768
Chromosome Location	chr10:52638933-52638934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10508934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12776639	0.86[EUR][1000 genomes]
rs17500631	0.94[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs17591401	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs17591964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34862725	0.86[EUR][1000 genomes]
rs34899345	0.86[EUR][1000 genomes]
rs61856593	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479769	0.91[MEX][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs7075575	0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs72787059	0.86[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52619800-52639800	Weak transcription	Fetal Intestine Large	intestine
3	chr10:52622800-52643000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:52629600-52642400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:52631400-52646600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:52632600-52640000	Weak transcription	Pancreas	Pancrea
7	chr10:52635200-52640000	Enhancers	HepG2	liver
8	chr10:52636400-52640600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:52637200-52640000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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