Variant report

Variant	rs6481024
Chromosome Location	chr10:55356694-55356695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10159501	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10762996	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12256830	0.92[ASN][1000 genomes]
rs1387655	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1387659	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489843	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932010	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1932011	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050381	0.88[AFR][1000 genomes]
rs2891482	0.92[ASN][1000 genomes]
rs351852	0.83[EUR][1000 genomes]
rs383804	0.88[EUR][1000 genomes]
rs386136	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs426872	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4271302	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439136	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs448075	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4935452	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56105712	0.92[ASN][1000 genomes]
rs66643903	0.92[ASN][1000 genomes]
rs7098418	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72791375	0.86[ASN][1000 genomes]
rs72791377	0.92[ASN][1000 genomes]
rs72791378	0.86[ASN][1000 genomes]
rs72791380	0.92[ASN][1000 genomes]
rs72791385	0.86[ASN][1000 genomes]
rs72791386	0.92[ASN][1000 genomes]
rs72791387	0.92[ASN][1000 genomes]
rs72791390	0.92[ASN][1000 genomes]
rs72791393	0.92[ASN][1000 genomes]
rs72791394	0.92[ASN][1000 genomes]
rs72793106	0.92[ASN][1000 genomes]
rs72793107	0.92[ASN][1000 genomes]
rs72793131	0.81[ASN][1000 genomes]
rs7904493	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9415285	0.88[EUR][1000 genomes]
rs9416277	0.87[AFR][1000 genomes]
rs9416282	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9416285	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv8665	chr10:55341562-55361281	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55350400-55357400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:55353400-55357400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:55354000-55359400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:55354000-55359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:55355400-55359600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:55355600-55357400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:55355600-55359400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:55355800-55359800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:55355800-55360000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:55356000-55358200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:55356200-55358400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:55356200-55359800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:55356400-55359200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:55356400-55359600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:55356600-55358800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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