Variant report

Variant	rs6482488
Chromosome Location	chr10:25790182-25790183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25788785..25792854-chr10:25793449..25797188,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10047266	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs10508700	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10741093	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs10828818	0.82[JPT][hapmap]
rs1329252	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1335199	0.81[JPT][hapmap]
rs1335200	0.81[JPT][hapmap]
rs1335209	0.80[JPT][hapmap]
rs1536836	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1536837	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981117	0.82[JPT][hapmap]
rs3923088	0.89[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs4097489	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4097490	0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4747523	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4747524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4747530	0.81[JPT][hapmap]
rs4749038	0.95[CHB][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4749040	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4749041	0.87[JPT][hapmap]
rs5001528	0.84[EUR][1000 genomes]
rs6482489	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7068743	0.84[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7072700	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7082952	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7090998	0.85[JPT][hapmap]
rs7091908	0.85[JPT][hapmap]
rs7100629	0.81[JPT][hapmap]
rs7478285	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7919640	0.82[JPT][hapmap]
rs943985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9919420	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:25785800-25791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:25786000-25791000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:25786400-25790400	Weak transcription	Fetal Heart	heart
6	chr10:25786800-25790800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:25788000-25790600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:25788000-25791800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:25788400-25790400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:25788400-25790800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:25788400-25792000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:25788600-25791000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:25788800-25790800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:25788800-25791400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:25789000-25790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:25789000-25791200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:25789000-25791200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:25789200-25790800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:25789200-25791200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:25789200-25791200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:25789400-25791000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:25789400-25791000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:25789800-25790200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:25789800-25790400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:25790000-25791600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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