Variant report

Variant	rs6482511
Chromosome Location	chr10:25966369-25966370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10764579	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828844	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10828845	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10828846	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10828847	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10828848	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828849	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014679	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12242832	0.88[ASN][1000 genomes]
rs2290167	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2367978	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4749059	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4749063	0.88[ASN][1000 genomes]
rs7080019	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7093919	0.92[ASN][1000 genomes]
rs7099373	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902742	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7908814	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv521776	chr10:25966369-25966730	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6482511	BMI1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25962800-25993600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links