Variant report

Variant	rs6483960
Chromosome Location	chr11:23562229-23562230
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10400283	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10834134	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11027283	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11027304	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11027305	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12794252	0.89[ASN][1000 genomes]
rs1381723	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2203869	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6483961	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6483962	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6483963	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7110430	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122954	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7935902	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23561000-23562600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:23561000-23563200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:23561400-23564000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:23561400-23564000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:23561600-23562600	Flanking Active TSS	Dnd41	blood
6	chr11:23561600-23562800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:23561600-23564000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:23561600-23577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:23561800-23562400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:23561800-23564000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:23561800-23565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:23562200-23562400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:23562200-23562600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:23562200-23563000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:23562200-23563000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:23562200-23563200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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