Variant report

Variant	rs6484774
Chromosome Location	chr11:35316929-35316930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35308134..35310646-chr11:35314364..35317327,2	K562	blood:
2	chr11:35315965..35318862-chr11:35320276..35323684,3	MCF-7	breast:
3	chr11:35315251..35317672-chr11:35387334..35389699,2	MCF-7	breast:
4	chr11:35316042..35322702-chr11:35383885..35387953,7	MCF-7	breast:
5	chr11:35315763..35317448-chr11:35338066..35339856,2	MCF-7	breast:
6	chr11:35306755..35309230-chr11:35314818..35317645,2	MCF-7	breast:
7	chr11:35295369..35301669-chr11:35315160..35319353,7	MCF-7	breast:
8	chr11:35315979..35318864-chr11:35345631..35348466,2	MCF-7	breast:
9	chr11:35314441..35321132-chr11:35406351..35414318,9	MCF-7	breast:
10	chr11:35312703..35315109-chr11:35315239..35317407,2	MCF-7	breast:
11	chr11:35303423..35306027-chr11:35316239..35317817,2	MCF-7	breast:
12	chr11:35283225..35285771-chr11:35316550..35319379,2	MCF-7	breast:
13	chr11:35316339..35320306-chr11:35324557..35327417,4	MCF-7	breast:
14	chr11:35316164..35320832-chr11:35323901..35327904,6	MCF-7	breast:
15	chr11:35316062..35317764-chr11:35341517..35344402,2	MCF-7	breast:
16	chr11:35295688..35300934-chr11:35309144..35319083,18	MCF-7	breast:
17	chr11:35307453..35309634-chr11:35314947..35317327,2	K562	blood:
18	chr11:35302986..35305293-chr11:35316241..35317975,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction
ENSG00000255004	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16927255	1.00[AMR][1000 genomes]
rs16927281	1.00[AMR][1000 genomes]
rs6484773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6484777	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106060	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439144	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
3	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:35304000-35324800	Weak transcription	Liver	Liver
8	chr11:35304600-35317000	Weak transcription	Pancreas	Pancrea
9	chr11:35304600-35326600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:35308000-35324000	Weak transcription	HepG2	liver
11	chr11:35308600-35325800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:35308600-35326400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:35309800-35318400	Weak transcription	Fetal Brain Female	brain
14	chr11:35310000-35325800	Weak transcription	Brain Germinal Matrix	brain
15	chr11:35312000-35317200	Weak transcription	HMEC	breast
16	chr11:35312000-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:35312600-35317000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:35312600-35318800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:35312600-35324000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:35312800-35317000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:35312800-35318800	Weak transcription	NHDF-Ad	bronchial
22	chr11:35312800-35324000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:35313400-35321800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:35313600-35320200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:35314200-35329200	Weak transcription	Fetal Brain Male	brain
26	chr11:35314400-35318200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:35314800-35327000	Weak transcription	Fetal Stomach	stomach
28	chr11:35315200-35324800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:35315800-35319800	Enhancers	Placenta	Placenta
30	chr11:35316800-35317000	Enhancers	Stomach Mucosa	stomach

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