Variant report

Variant	rs6485682
Chromosome Location	chr11:46446264-46446265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46443696..46446311-chr11:46446481..46448303,2	K562	blood:
2	chr11:46440995..46443504-chr11:46446202..46449083,2	MCF-7	breast:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10160701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838602	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038900	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038927	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11819869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12272795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12283172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12295266	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12573978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12575519	0.98[EUR][1000 genomes]
rs12576115	0.94[EUR][1000 genomes]
rs12576317	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12576359	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12577142	0.95[EUR][1000 genomes]
rs12578042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1472001	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1489192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16938506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17197116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2046768	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs2067482	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2171667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2171668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2279465	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs2291487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2864072	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2864076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2902858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34406563	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes]
rs35324223	0.86[EUR][1000 genomes]
rs35623865	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs3740974	0.98[EUR][1000 genomes]
rs3740977	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs3802888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3809047	0.85[JPT][hapmap]
rs4307676	0.87[EUR][1000 genomes]
rs55657382	0.91[EUR][1000 genomes]
rs55661562	0.91[EUR][1000 genomes]
rs55750336	0.84[ASN][1000 genomes]
rs55896955	0.80[EUR][1000 genomes]
rs57535407	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58147945	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59319338	0.95[EUR][1000 genomes]
rs60722866	0.88[EUR][1000 genomes]
rs60932698	0.89[EUR][1000 genomes]
rs61882674	0.82[EUR][1000 genomes]
rs61882678	0.90[EUR][1000 genomes]
rs61882682	0.96[EUR][1000 genomes]
rs61882683	0.92[EUR][1000 genomes]
rs61882691	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882701	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882702	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61882706	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61882709	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882710	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882711	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882712	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882720	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882743	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882746	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882748	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882750	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882756	0.91[EUR][1000 genomes]
rs61882757	0.93[EUR][1000 genomes]
rs61882758	0.93[EUR][1000 genomes]
rs61884262	0.85[EUR][1000 genomes]
rs61884264	0.93[EUR][1000 genomes]
rs61884271	0.89[EUR][1000 genomes]
rs61884273	0.87[EUR][1000 genomes]
rs61884274	0.87[EUR][1000 genomes]
rs61884292	0.80[EUR][1000 genomes]
rs6485685	0.91[EUR][1000 genomes]
rs7108770	0.91[EUR][1000 genomes]
rs7109698	0.81[EUR][1000 genomes]
rs7112229	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7122039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7125907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7126316	0.86[EUR][1000 genomes]
rs7126343	0.87[EUR][1000 genomes]
rs7127529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7128092	0.86[EUR][1000 genomes]
rs7130141	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73449983	0.93[EUR][1000 genomes]
rs7481312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7484002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs756343	0.84[ASN][1000 genomes]
rs7924401	0.92[EUR][1000 genomes]
rs7930103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7932866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7936413	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs7946705	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951579	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951870	1.00[CEU][hapmap];0.85[JPT][hapmap];0.99[EUR][1000 genomes]
rs876701	1.00[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv541029	chr11:46442658-46460232	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46417800-46463400	Weak transcription	Fetal Brain Male	brain
2	chr11:46421000-46447000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:46426800-46468800	Weak transcription	Psoas Muscle	Psoas
4	chr11:46429200-46446400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:46430200-46450600	Weak transcription	HUVEC	blood vessel
6	chr11:46430200-46456000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:46430600-46451600	Weak transcription	NHDF-Ad	bronchial
8	chr11:46430600-46455000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:46433200-46449200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:46433600-46466400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr11:46435000-46446400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:46436400-46450600	Weak transcription	Osteobl	bone
13	chr11:46436400-46454400	Weak transcription	A549	lung
14	chr11:46436600-46448600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:46436600-46466400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:46437000-46452000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:46437200-46449200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:46437200-46452600	Weak transcription	HMEC	breast
19	chr11:46437400-46455000	Weak transcription	Stomach Mucosa	stomach
20	chr11:46437600-46452600	Weak transcription	NH-A	brain
21	chr11:46437800-46450600	Weak transcription	HSMM	muscle
22	chr11:46437800-46452400	Weak transcription	Fetal Kidney	kidney
23	chr11:46438000-46461400	Strong transcription	Primary T cells from cord blood	blood
24	chr11:46438400-46447800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:46438400-46448600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:46438400-46451800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:46438400-46454400	Weak transcription	Brain Angular Gyrus	brain
28	chr11:46438400-46457200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:46438400-46459600	Strong transcription	Dnd41	blood
30	chr11:46439000-46452200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:46439000-46452800	Weak transcription	Fetal Brain Female	brain
32	chr11:46439600-46449800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr11:46439600-46450600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:46439600-46450600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr11:46439600-46452200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:46439600-46454200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:46440400-46466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:46440600-46447600	Weak transcription	Brain Substantia Nigra	brain
39	chr11:46440600-46448800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:46440600-46452600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:46440800-46451200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:46441200-46447000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:46442000-46446400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr11:46442000-46446800	Strong transcription	Fetal Muscle Leg	muscle
45	chr11:46442000-46447800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:46442800-46446400	Strong transcription	Placenta	Placenta
47	chr11:46443200-46447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:46443200-46449600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:46443200-46450600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:46443200-46450800	Weak transcription	Colonic Mucosa	Colon

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