Variant report

Variant	rs6485695
Chromosome Location	chr11:46836165-46836166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46835200..46837262-chr11:46837857..46839815,2	K562	blood:
2	chr1:145012787..145014315-chr11:46834339..46836400,2	MCF-7	breast:
3	chr11:46835868..46836380-chr11:47182883..47183547,2	MCF-7	breast:
4	chr11:46830883..46837323-chr11:46838185..46842346,7	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1007738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10734548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10734549	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742784	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10769208	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769211	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769212	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838612	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10838620	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838624	0.91[ASN][1000 genomes]
rs10838627	0.84[ASN][1000 genomes]
rs10838628	0.84[ASN][1000 genomes]
rs10838629	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11038977	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11038994	0.99[ASN][1000 genomes]
rs11038999	0.95[ASN][1000 genomes]
rs11039002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11039014	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039017	0.84[ASN][1000 genomes]
rs11602036	0.91[ASN][1000 genomes]
rs12575609	0.96[ASN][1000 genomes]
rs12806577	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12807111	0.87[EUR][1000 genomes]
rs1551744	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1809293	0.91[ASN][1000 genomes]
rs2035068	0.86[EUR][1000 genomes]
rs2070850	0.87[CHB][hapmap]
rs2290883	0.91[ASN][1000 genomes]
rs2290884	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306026	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306027	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2306028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2306033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2306035	0.87[EUR][1000 genomes]
rs2306036	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2306037	1.00[JPT][hapmap]
rs3136441	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3136447	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3136457	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3136460	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3816614	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3829940	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4075619	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076557	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4294527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4394802	0.81[JPT][hapmap]
rs4453193	0.91[ASN][1000 genomes]
rs4453194	0.87[ASN][1000 genomes]
rs4469848	0.99[ASN][1000 genomes]
rs4534535	0.91[ASN][1000 genomes]
rs4752927	0.91[JPT][hapmap]
rs4752932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4752936	0.99[ASN][1000 genomes]
rs4752940	0.95[ASN][1000 genomes]
rs4752941	0.92[ASN][1000 genomes]
rs4752946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4752947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs5896	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs60258676	0.91[ASN][1000 genomes]
rs6485692	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7101374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107778	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7109707	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118170	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7119247	0.83[ASN][1000 genomes]
rs7480140	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7480260	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929294	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7934421	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940441	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs7940578	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940682	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7941252	0.90[EUR][1000 genomes]
rs7941894	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7941964	0.95[ASN][1000 genomes]
rs7943866	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs964551	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3335996	chr11:46818751-46843532	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46761400-46840000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:46761400-46845200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:46762600-46841400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46762800-46842400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:46763400-46839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:46778800-46841200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:46782600-46847400	Weak transcription	Stomach Mucosa	stomach
8	chr11:46788200-46841400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:46788600-46840600	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:46812000-46847600	Weak transcription	Right Ventricle	heart
11	chr11:46813200-46837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:46814600-46845800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:46815200-46847800	Weak transcription	Gastric	stomach
14	chr11:46816400-46847800	Weak transcription	Spleen	Spleen
15	chr11:46817600-46836800	Weak transcription	Esophagus	oesophagus
16	chr11:46818800-46846800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:46819000-46847400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:46819200-46847600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:46819600-46847600	Weak transcription	Brain Angular Gyrus	brain
20	chr11:46819600-46847800	Weak transcription	Pancreas	Pancrea
21	chr11:46819800-46847400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:46820000-46837000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:46820800-46847600	Weak transcription	Small Intestine	intestine
24	chr11:46821000-46836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:46821000-46837000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:46821600-46847600	Weak transcription	Psoas Muscle	Psoas
27	chr11:46824000-46837200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:46824200-46847600	Weak transcription	Right Atrium	heart
29	chr11:46824800-46841000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:46827000-46841800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:46827200-46840200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:46827400-46840400	Strong transcription	Fetal Thymus	thymus
33	chr11:46827400-46841200	Strong transcription	Hela-S3	cervix
34	chr11:46827600-46841000	Strong transcription	Dnd41	blood
35	chr11:46828600-46843200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:46828800-46837200	Weak transcription	Ovary	ovary
37	chr11:46828800-46847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:46829000-46837200	Weak transcription	Fetal Kidney	kidney
39	chr11:46829400-46839000	Weak transcription	Fetal Heart	heart
40	chr11:46829800-46837200	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:46830400-46837200	Weak transcription	HSMMtube	muscle
42	chr11:46830400-46847400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:46830800-46839000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:46831000-46836400	Weak transcription	Liver	Liver
45	chr11:46831000-46836600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:46831200-46836800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:46831200-46837400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:46831200-46847600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:46831400-46847400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:46831400-46847800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links