Variant report

Variant	rs6485702
Chromosome Location	chr11:46898771-46898772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:46898769-46898905	HepG2	liver:	n/a	chr11:46898809-46898824

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46894798..46897248-chr11:46898415..46900629,3	K562	blood:
2	chr11:46869890..46871756-chr11:46897945..46899675,2	K562	blood:

Variant related genes	Relation type
LRP4	TF binding region
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1007738	0.91[GIH][hapmap]
rs10734548	0.94[GIH][hapmap];0.80[MEX][hapmap]
rs10769205	0.82[CHB][hapmap];0.81[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs10769211	0.91[GIH][hapmap];0.80[MEX][hapmap]
rs10838621	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838622	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11039014	0.91[GIH][hapmap]
rs12361673	0.82[CHB][hapmap];0.81[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs12806687	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1551744	0.91[GIH][hapmap];0.80[MEX][hapmap]
rs2070852	0.91[ASW][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs2306029	0.81[ASW][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2306032	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485690	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6485696	0.81[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7101374	0.91[GIH][hapmap]
rs7103581	0.86[CHD][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap]
rs7107778	0.94[GIH][hapmap];0.80[MEX][hapmap]
rs7108902	0.86[CHD][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap]
rs7118404	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7125807	0.86[CHD][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap]
rs7929294	0.94[GIH][hapmap]
rs7931260	0.86[CHD][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap]
rs7932354	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7940441	0.83[GIH][hapmap];0.84[MEX][hapmap]
rs964551	0.94[GIH][hapmap];0.80[MEX][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6485702	ACP2	cis	lymphoblastoid	seeQTL
rs6485702	ARHGAP1	cis	Muscle Skeletal	GTEx

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
3	chr11:46868800-46913000	Weak transcription	A549	lung
4	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
14	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:46879200-46901200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:46880000-46901000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr11:46883800-46899200	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr11:46883800-46904200	Strong transcription	Stomach Smooth Muscle	stomach
25	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
26	chr11:46886200-46907000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
28	chr11:46888200-46900800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:46888200-46901400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:46888600-46901200	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:46888800-46901000	Strong transcription	Brain Anterior Caudate	brain
32	chr11:46889400-46898800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:46889400-46899200	Strong transcription	HepG2	liver
34	chr11:46889400-46900800	Strong transcription	Left Ventricle	heart
35	chr11:46889400-46900800	Strong transcription	Ovary	ovary
36	chr11:46889400-46901800	Strong transcription	Brain Hippocampus Middle	brain
37	chr11:46889400-46903600	Strong transcription	Brain Substantia Nigra	brain
38	chr11:46889600-46898800	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:46889800-46899000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:46889800-46900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:46892000-46899000	Strong transcription	Brain Angular Gyrus	brain
42	chr11:46892000-46901000	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr11:46892000-46901400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:46892400-46900800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:46892400-46901000	Strong transcription	Brain Cingulate Gyrus	brain
46	chr11:46892400-46901200	Strong transcription	Placenta	Placenta
47	chr11:46892600-46898800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:46892600-46899200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:46892600-46900600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:46892600-46901000	Strong transcription	Right Ventricle	heart

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