Variant report

Variant	rs6485754
Chromosome Location	chr11:47414064-47414065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47413542..47416726-chr11:47428745..47432834,3	MCF-7	breast:
2	chr11:47412848..47414613-chr11:47424620..47426609,2	K562	blood:
3	chr11:47395359..47404298-chr11:47408556..47417905,22	K562	blood:
4	chr11:47413041..47414812-chr11:47414984..47418620,3	K562	blood:
5	chr11:47412485..47416109-chr11:47429028..47432414,5	K562	blood:
6	chr11:47411551..47414377-chr11:47444629..47446217,2	K562	blood:
7	chr11:47413050..47415602-chr11:47418934..47421513,3	MCF-7	breast:
8	chr11:47408757..47411550-chr11:47413345..47415143,3	K562	blood:
9	chr11:47411629..47418031-chr11:47425327..47431880,15	K562	blood:
10	chr11:47412158..47414151-chr11:47433549..47435793,2	MCF-7	breast:
11	chr11:47400131..47402578-chr11:47411947..47414997,4	K562	blood:
12	chr11:47410723..47415239-chr11:47428368..47430840,4	MCF-7	breast:
13	chr11:47411798..47414791-chr11:47455255..47456985,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000066336	Chromatin interaction
ENSG00000165915	Chromatin interaction
ENSG00000255197	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1017594	1.00[AFR][1000 genomes]
rs10466401	1.00[AFR][1000 genomes]
rs10742808	1.00[AFR][1000 genomes]
rs10769261	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10769269	1.00[AFR][1000 genomes]
rs10838701	1.00[AFR][1000 genomes]
rs11039196	1.00[AFR][1000 genomes]
rs11039228	1.00[AFR][1000 genomes]
rs11602132	1.00[AFR][1000 genomes]
rs2020057	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2084541	1.00[AFR][1000 genomes]
rs2868447	1.00[AFR][1000 genomes]
rs2868603	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4519056	1.00[AFR][1000 genomes]
rs4752826	1.00[AFR][1000 genomes]
rs4752831	1.00[AFR][1000 genomes]
rs4752841	1.00[AFR][1000 genomes]
rs4752982	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4752985	1.00[AFR][1000 genomes]
rs4752989	1.00[AFR][1000 genomes]
rs4752991	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4752995	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6485757	1.00[YRI][hapmap]
rs7105005	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7116487	1.00[YRI][hapmap]
rs7119799	1.00[AFR][1000 genomes]
rs7932148	1.00[AFR][1000 genomes]
rs7934846	1.00[AFR][1000 genomes]
rs7940413	1.00[YRI][hapmap]
rs7951044	1.00[AFR][1000 genomes]
rs963331	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9666418	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv825871	chr11:47376020-47457537	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv554210	chr11:47380593-47449544	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
8	nsv541034	chr11:47404083-47440081	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
10	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47399400-47421400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:47399800-47421200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:47400000-47415200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:47400000-47416000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:47400000-47416800	Weak transcription	Brain Anterior Caudate	brain
6	chr11:47400000-47421200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:47405400-47415000	Weak transcription	Right Atrium	heart
8	chr11:47408400-47418000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr11:47408600-47416000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:47409200-47417800	Enhancers	Spleen	Spleen
11	chr11:47409400-47414200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:47409400-47414400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:47409400-47415000	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:47409600-47415800	Enhancers	Adipose Nuclei	Adipose
15	chr11:47409800-47417600	Enhancers	Fetal Muscle Leg	muscle
16	chr11:47410000-47416800	Weak transcription	Brain Substantia Nigra	brain
17	chr11:47410200-47421200	Weak transcription	Fetal Intestine Small	intestine
18	chr11:47410600-47415800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:47410800-47415600	Weak transcription	Gastric	stomach
20	chr11:47411000-47414200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:47411000-47416000	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:47411400-47414600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:47411400-47414600	Weak transcription	Colonic Mucosa	Colon
24	chr11:47411400-47415200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:47411800-47414200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:47411800-47414400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:47411800-47414800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:47411800-47415000	Enhancers	Primary B cells from cord blood	blood
29	chr11:47411800-47415000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:47412000-47414600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:47412000-47415000	Weak transcription	Primary T cells from cord blood	blood
32	chr11:47412000-47415000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:47412000-47415800	Enhancers	Placenta	Placenta
34	chr11:47412000-47416200	Enhancers	GM12878-XiMat	blood
35	chr11:47412200-47414400	Weak transcription	Lung	lung
36	chr11:47412200-47415000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:47412400-47414200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:47412400-47417800	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:47412600-47414400	Weak transcription	Stomach Mucosa	stomach
40	chr11:47412600-47417800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:47412800-47414800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr11:47412800-47415000	Enhancers	K562	blood
43	chr11:47412800-47415400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:47413000-47414800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr11:47413000-47415000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:47413000-47415800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:47413000-47417800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr11:47413200-47415600	Weak transcription	Esophagus	oesophagus
49	chr11:47413200-47415800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr11:47413400-47414800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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