Variant report

Variant	rs6486326
Chromosome Location	chr11:16977260-16977261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16975638..16979707-chr11:16982694..16985336,3	MCF-7	breast:
2	chr11:16976889..16978865-chr11:17008807..17011495,3	MCF-7	breast:
3	chr11:16975602..16978503-chr11:16980370..16983065,3	MCF-7	breast:
4	chr11:16976807..16979737-chr11:16986276..16990868,5	MCF-7	breast:
5	chr11:16975727..16978192-chr11:16983279..16985913,2	MCF-7	breast:
6	chr11:16966281..16969842-chr11:16976430..16978510,4	MCF-7	breast:
7	chr11:16976871..16981000-chr11:17000472..17004649,3	MCF-7	breast:
8	chr11:16974672..16978639-chr11:17033931..17036270,6	MCF-7	breast:
9	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184669	Chromatin interaction
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10741713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418111	0.89[JPT][hapmap]
rs16933675	0.88[JPT][hapmap]
rs16933680	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16933682	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16933683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16933684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177551	0.81[ASN][1000 genomes]
rs177554	0.83[ASN][1000 genomes]
rs177559	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177560	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177561	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1860024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860025	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057788	0.89[JPT][hapmap]
rs2108603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215086	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353367	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2883150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35005405	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35109048	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs369457	0.88[JPT][hapmap]
rs371905	0.88[JPT][hapmap]
rs381815	0.94[JPT][hapmap]
rs387849	0.89[JPT][hapmap]
rs388968	0.88[JPT][hapmap]
rs389967	0.82[JPT][hapmap]
rs390974	0.88[JPT][hapmap]
rs393633	0.94[JPT][hapmap]
rs397343	0.89[JPT][hapmap]
rs397373	0.94[JPT][hapmap]
rs400085	0.88[JPT][hapmap]
rs400458	0.89[JPT][hapmap]
rs401820	0.88[JPT][hapmap]
rs402982	0.83[JPT][hapmap]
rs406890	0.89[JPT][hapmap]
rs407354	0.94[JPT][hapmap]
rs414219	0.94[JPT][hapmap]
rs414992	0.94[JPT][hapmap]
rs417406	0.82[JPT][hapmap]
rs420975	0.88[JPT][hapmap]
rs425325	0.94[JPT][hapmap]
rs428840	0.94[JPT][hapmap]
rs428933	0.89[JPT][hapmap]
rs430211	0.89[JPT][hapmap]
rs431208	0.89[JPT][hapmap]
rs432046	0.94[JPT][hapmap]
rs433212	0.89[JPT][hapmap]
rs433225	0.88[JPT][hapmap]
rs434761	0.89[JPT][hapmap]
rs434899	0.88[JPT][hapmap]
rs435206	0.94[JPT][hapmap]
rs440212	0.88[JPT][hapmap]
rs445146	0.88[JPT][hapmap]
rs445205	0.94[JPT][hapmap]
rs446518	0.94[JPT][hapmap]
rs448671	0.94[JPT][hapmap]
rs450828	0.88[JPT][hapmap]
rs452414	0.89[JPT][hapmap]
rs452745	0.88[JPT][hapmap]
rs454869	0.89[JPT][hapmap]
rs4756875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757445	0.90[ASN][1000 genomes]
rs4757449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757454	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486329	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7396552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481080	0.83[JPT][hapmap]
rs758402	0.83[ASN][1000 genomes]
rs7924696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926335	0.89[JPT][hapmap]
rs7929137	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs982811	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16964200-16981400	Weak transcription	Gastric	stomach
4	chr11:16965400-16978200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:16968000-16977800	Weak transcription	Pancreas	Pancrea
6	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
7	chr11:16968400-16978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:16968400-16980000	Weak transcription	Liver	Liver
9	chr11:16968800-16977800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:16968800-16978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:16971200-16979400	Enhancers	Stomach Mucosa	stomach
13	chr11:16972400-16978000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:16973000-16977400	Enhancers	Fetal Intestine Small	intestine
15	chr11:16973600-16982600	Enhancers	Fetal Intestine Large	intestine
16	chr11:16974800-16980600	Weak transcription	Fetal Lung	lung
17	chr11:16975200-16977400	Enhancers	HepG2	liver
18	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
19	chr11:16975600-16977400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:16975600-16977800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:16976000-16977800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:16976000-16979200	Enhancers	Placenta	Placenta
23	chr11:16976200-16980800	Weak transcription	Fetal Kidney	kidney
24	chr11:16976600-16977600	Enhancers	A549	lung
25	chr11:16976800-16977800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:16977200-16977400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:16977200-16978000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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