Variant report

Variant	rs6486358
Chromosome Location	chr11:17256244-17256245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10741724	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10766381	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832745	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832746	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10832747	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10832748	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11024204	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11024207	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11024208	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1125737	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1979603	0.85[EUR][1000 genomes]
rs214900	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs214901	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs214909	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214910	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214911	0.83[EUR][1000 genomes]
rs214912	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs214913	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs214914	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214915	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs214916	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214917	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214918	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214919	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214920	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214921	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214922	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214925	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214926	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs214927	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2171615	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4509731	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59192183	0.80[EUR][1000 genomes]
rs594034	0.81[AMR][1000 genomes]
rs603618	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61357262	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs618331	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs656623	0.81[EUR][1000 genomes]
rs7101686	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7118443	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7342262	0.85[EUR][1000 genomes]
rs7925692	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7937176	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7940418	0.85[EUR][1000 genomes]
rs7949699	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6486358	OR7E14P	cis	Nerve Tibial	GTEx
rs6486358	NUCB2	Cis_1M	lymphoblastoid	RTeQTL
rs6486358	OR7E14P	cis	Esophagus Mucosa	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17256200-17259800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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