Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10773039	0.87[ASN][1000 genomes]
rs10773041	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10846562	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10846564	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10846567	0.86[ASN][1000 genomes]
rs11057381	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11057383	0.84[ASN][1000 genomes]
rs1882489	0.83[ASN][1000 genomes]
rs1922258	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2341779	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4390427	0.80[ASN][1000 genomes]
rs4930727	0.86[ASN][1000 genomes]
rs6488907	0.85[ASN][1000 genomes]
rs7297429	0.84[ASN][1000 genomes]
rs7300037	0.82[ASN][1000 genomes]
rs7313897	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7314335	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7959043	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7959519	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7977713	0.92[ASN][1000 genomes]
rs9669530	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124326000-124341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:124331400-124352800	Weak transcription	Fetal Brain Female	brain
3	chr12:124334200-124344200	Weak transcription	Brain Germinal Matrix	brain
4	chr12:124338400-124339200	Enhancers	K562	blood
5	chr12:124338600-124345400	Weak transcription	Fetal Brain Male	brain
6	chr12:124338800-124339200	Active TSS	Ovary	ovary

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