Variant report

Variant	rs6492307
Chromosome Location	chr13:111374232-111374233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:111370419..111377483-chr13:111379803..111385146,6	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs170618	0.81[AFR][1000 genomes]
rs4773242	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
2	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
3	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
4	nsv901014	chr13:111302922-111380684	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	197 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111369200-111376000	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:111369200-111376200	Weak transcription	HSMMtube	muscle
3	chr13:111369200-111381400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:111370200-111379000	Weak transcription	HUVEC	blood vessel
5	chr13:111370200-111383400	Weak transcription	Right Atrium	heart
6	chr13:111370400-111374600	Weak transcription	HMEC	breast
7	chr13:111370400-111379400	Weak transcription	Fetal Kidney	kidney
8	chr13:111370800-111374400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:111370800-111375400	Weak transcription	Brain Anterior Caudate	brain
10	chr13:111370800-111375600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:111370800-111375800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:111370800-111377800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr13:111370800-111378000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:111370800-111379200	Weak transcription	Psoas Muscle	Psoas
15	chr13:111370800-111380200	Weak transcription	HSMM	muscle
16	chr13:111370800-111380800	Weak transcription	Hela-S3	cervix
17	chr13:111371000-111377800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr13:111371000-111377800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr13:111371200-111375000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:111371200-111375600	Strong transcription	Dnd41	blood
21	chr13:111371400-111374400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:111371400-111375200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:111371400-111376400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr13:111371600-111374400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr13:111371600-111374400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr13:111371600-111374400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr13:111371600-111374800	Weak transcription	Fetal Brain Male	brain
28	chr13:111371600-111375000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr13:111371600-111375200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr13:111371600-111375200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr13:111371600-111375400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:111371600-111375400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr13:111371600-111377800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr13:111371800-111375000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr13:111371800-111375200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr13:111371800-111376000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr13:111372000-111374400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr13:111372000-111375600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr13:111372200-111376000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:111372200-111376200	Strong transcription	Thymus	Thymus
41	chr13:111372200-111376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr13:111372200-111376600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr13:111372200-111377400	Weak transcription	Left Ventricle	heart
44	chr13:111372200-111377800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr13:111372200-111378200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr13:111372200-111379000	Weak transcription	Small Intestine	intestine
47	chr13:111372200-111379600	Weak transcription	NHLF	lung
48	chr13:111372200-111380000	Weak transcription	Gastric	stomach
49	chr13:111372200-111381600	Weak transcription	A549	lung
50	chr13:111372200-111383400	Weak transcription	Esophagus	oesophagus

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