Variant report

Variant	rs6492807
Chromosome Location	chr13:96159560-96159561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96158409..96159956-chr13:96164959..96167246,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10219866	0.81[ASN][1000 genomes]
rs11619150	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs11843974	0.86[CHD][hapmap]
rs12866697	0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12872431	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs12876693	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1570903	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs1570904	0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs1890373	0.85[CHB][hapmap]
rs4322517	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4335657	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4387474	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4409957	0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs4466958	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs4564445	0.81[ASN][1000 genomes]
rs4587819	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4609701	0.81[ASN][1000 genomes]
rs4773907	0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4773910	0.82[ASN][1000 genomes]
rs4773911	0.82[ASN][1000 genomes]
rs4773912	0.82[CHB][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6492792	0.81[ASN][1000 genomes]
rs6492796	0.81[ASN][1000 genomes]
rs6492797	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs6492798	0.84[EUR][1000 genomes]
rs6492799	0.85[EUR][1000 genomes]
rs7322391	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs7326265	0.81[ASN][1000 genomes]
rs7326546	0.84[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs7328468	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs7332888	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7332917	0.82[CHB][hapmap]
rs7338647	0.82[CHB][hapmap]
rs7982486	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs7982563	0.81[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7984234	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs7990054	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7992297	0.85[EUR][1000 genomes]
rs7995959	0.82[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8002444	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs8002639	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs877962	0.82[CHB][hapmap];0.91[CHD][hapmap]
rs927788	0.84[CHD][hapmap]
rs9302074	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs946228	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs946231	0.81[CHB][hapmap]
rs9516589	0.81[ASN][1000 genomes]
rs9516592	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524982	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs9524983	0.82[ASN][1000 genomes]
rs9524984	0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9524986	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs9524987	0.80[ASN][1000 genomes]
rs9524988	0.80[ASN][1000 genomes]
rs9524991	0.91[CHD][hapmap]
rs9524992	0.90[ASN][1000 genomes]
rs9524993	0.90[AFR][1000 genomes]
rs9590285	0.82[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96150600-96166800	Weak transcription	Pancreas	Pancrea
2	chr13:96150600-96167800	Weak transcription	Esophagus	oesophagus
3	chr13:96157800-96160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:96158000-96160800	Weak transcription	HMEC	breast
5	chr13:96158000-96161400	Weak transcription	NH-A	brain
6	chr13:96158000-96162000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:96158400-96161400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:96158600-96162000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:96158800-96161800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links