Variant report

Variant	rs6492811
Chromosome Location	chr13:96217135-96217136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96212339..96214130-chr13:96214370..96217172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134873	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1467648	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3759446	0.82[CEU][hapmap]
rs3848075	0.82[CEU][hapmap]
rs4536336	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4773918	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492813	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs71433089	0.80[EUR][1000 genomes]
rs7325366	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7350684	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9556491	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561919	1.00[CEU][hapmap]
rs9561921	0.82[CEU][hapmap]
rs9561933	0.85[CEU][hapmap]
rs9561938	0.82[CEU][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:96210400-96229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:96211000-96220600	Weak transcription	Pancreas	Pancrea
7	chr13:96212400-96231000	Weak transcription	Fetal Kidney	kidney
8	chr13:96213200-96220600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:96216200-96217600	Enhancers	HMEC	breast
10	chr13:96216400-96217200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr13:96216400-96217200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr13:96216600-96217200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:96216600-96217600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:96216600-96217600	Enhancers	Hela-S3	cervix
15	chr13:96216600-96217800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr13:96216800-96217200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:96216800-96217200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr13:96216800-96217200	Enhancers	NH-A	brain
19	chr13:96216800-96217400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:96216800-96217400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:96216800-96217600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr13:96216800-96217600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:96216800-96217600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr13:96216800-96217800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:96217000-96217200	Flanking Active TSS	Osteobl	bone
26	chr13:96217000-96217400	Flanking Active TSS	HUVEC	blood vessel
27	chr13:96217000-96217600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr13:96217000-96217800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:96217000-96231200	Weak transcription	Primary hematopoietic stem cells	blood

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