Variant report

Variant	rs6492827
Chromosome Location	chr13:96621147-96621148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 161 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1015068	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070154	0.91[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.84[LWK][hapmap];0.86[MEX][hapmap];0.81[ASN][1000 genomes]
rs11070157	0.96[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1114308	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11616658	0.84[ASN][1000 genomes]
rs11619333	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11619490	0.83[AMR][1000 genomes]
rs11840966	0.81[ASN][1000 genomes]
rs11841021	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11842396	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11843772	0.88[AMR][1000 genomes]
rs12583522	0.80[AMR][1000 genomes]
rs12585387	0.81[AMR][1000 genomes]
rs12858210	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12860877	0.81[AMR][1000 genomes]
rs12870771	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12876018	1.00[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1411557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1537030	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1537031	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17189895	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17189951	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1813179	0.83[AMR][1000 genomes]
rs1854173	0.88[AMR][1000 genomes]
rs1872161	0.96[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1877475	0.87[GIH][hapmap];0.86[JPT][hapmap]
rs2026818	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs2026819	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2062276	0.96[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2129005	0.83[AMR][1000 genomes]
rs2170812	0.83[AMR][1000 genomes]
rs2389532	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2389570	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389571	0.83[AMR][1000 genomes]
rs28649586	0.85[AMR][1000 genomes]
rs34738594	0.84[ASN][1000 genomes]
rs34816227	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35423192	0.82[ASN][1000 genomes]
rs35685996	0.82[AMR][1000 genomes]
rs35836619	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35898412	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36079088	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36101002	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3759441	0.96[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes]
rs3759442	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes]
rs3782989	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3782990	0.81[AMR][1000 genomes]
rs3825424	0.82[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4547218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4771923	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4773928	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes]
rs4773929	0.84[ASN][1000 genomes]
rs4773933	0.83[AMR][1000 genomes]
rs4773934	0.83[AMR][1000 genomes]
rs4773935	0.82[AMR][1000 genomes]
rs55822301	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57924129	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59592654	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60677558	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61972920	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61973963	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6492824	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.83[ASN][1000 genomes]
rs6492825	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6492828	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6492829	0.91[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67447270	0.81[ASN][1000 genomes]
rs7317285	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7320351	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7321296	0.83[ASN][1000 genomes]
rs7322566	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7323150	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes]
rs7323734	0.83[ASN][1000 genomes]
rs7323780	0.83[ASN][1000 genomes]
rs7324957	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7325690	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7325915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7327532	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328164	0.90[AMR][1000 genomes]
rs7328703	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7331461	0.89[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7331926	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7332683	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7333370	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7333843	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7334100	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7334508	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs7335319	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7335514	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7335872	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7336088	0.96[CEU][hapmap];0.91[CHB][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.87[MKK][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7336373	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7336483	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7337653	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7338224	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7338859	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs764714	0.83[AMR][1000 genomes]
rs7981923	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap]
rs7982337	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7983546	0.81[ASN][1000 genomes]
rs7983589	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs7983843	0.81[AMR][1000 genomes]
rs7986005	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7990833	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7991250	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7992875	0.83[AMR][1000 genomes]
rs7998353	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8000849	0.81[ASN][1000 genomes]
rs9556503	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9556504	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9556505	0.85[ASN][1000 genomes]
rs9556506	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9556508	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556509	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556511	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556513	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556515	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9556516	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9556517	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9556518	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9556520	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9556521	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9556523	0.83[AMR][1000 genomes]
rs9561964	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9561967	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.84[ASN][1000 genomes]
rs9561969	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[ASN][1000 genomes]
rs9561971	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9561973	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561974	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9561975	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9561976	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9561981	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561984	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9561985	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9561987	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9561988	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561991	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561995	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561996	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9562003	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562005	0.99[ASN][1000 genomes]
rs9562006	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9562007	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9562008	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9562012	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes]
rs9562014	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9562015	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9562016	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9562017	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9562018	0.82[AMR][1000 genomes]
rs9562019	0.91[AMR][1000 genomes]
rs9634487	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes]
rs9670470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900935	chr13:96497070-96631221	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6492827	CLDN10	cis	cerebellum	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96577000-96623200	Weak transcription	NHLF	lung
2	chr13:96591600-96622000	Weak transcription	Hela-S3	cervix
3	chr13:96599000-96623600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr13:96609400-96623600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:96609800-96636200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:96612200-96622800	Weak transcription	Spleen	Spleen
7	chr13:96612200-96623600	Weak transcription	Placenta	Placenta
8	chr13:96612200-96655000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:96612200-96668600	Weak transcription	Pancreas	Pancrea
10	chr13:96612400-96623200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:96613200-96694200	Weak transcription	A549	lung
12	chr13:96613400-96623200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:96613400-96634000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:96613400-96641600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:96613400-96643000	Weak transcription	Right Ventricle	heart
16	chr13:96613600-96650000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:96613600-96663600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:96614000-96652400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:96614200-96621400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr13:96616200-96623000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr13:96616200-96623800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr13:96616200-96668600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr13:96616400-96624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:96616400-96627000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr13:96616400-96636200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr13:96616600-96623400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr13:96616800-96623800	Weak transcription	Liver	Liver
28	chr13:96616800-96624600	Weak transcription	Brain Angular Gyrus	brain
29	chr13:96616800-96628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr13:96616800-96668400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:96617000-96649000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr13:96617000-96663200	Weak transcription	NHDF-Ad	bronchial
33	chr13:96617200-96621800	Weak transcription	Brain Anterior Caudate	brain
34	chr13:96617200-96625200	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:96617400-96638200	Weak transcription	HSMMtube	muscle
36	chr13:96618800-96622000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr13:96618800-96623800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:96618800-96654200	Weak transcription	Fetal Lung	lung
39	chr13:96619000-96622800	Weak transcription	HMEC	breast
40	chr13:96619000-96634200	Weak transcription	Brain Hippocampus Middle	brain
41	chr13:96619600-96638200	Weak transcription	Fetal Intestine Small	intestine
42	chr13:96620200-96623000	Weak transcription	Brain Substantia Nigra	brain
43	chr13:96620600-96621400	Strong transcription	Left Ventricle	heart
44	chr13:96620600-96621600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr13:96620600-96621600	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr13:96620600-96621600	ZNF genes & repeats	GM12878-XiMat	blood
47	chr13:96620600-96621800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr13:96620600-96621800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr13:96620600-96622000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:96620600-96622000	Strong transcription	Aorta	Aorta

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