Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53146343..53148620-chr15:53150842..53152485,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12232305	0.88[ASN][1000 genomes]
rs16965222	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17709181	0.90[ASN][1000 genomes]
rs1947042	0.88[EUR][1000 genomes]
rs2120440	0.85[ASN][1000 genomes]
rs2120441	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2440371	0.85[EUR][1000 genomes]
rs2440372	0.80[EUR][1000 genomes]
rs2456497	0.82[EUR][1000 genomes]
rs2456509	0.90[ASN][1000 genomes]
rs2456510	0.95[ASN][1000 genomes]
rs28415452	0.97[ASN][1000 genomes]
rs28449533	0.93[ASN][1000 genomes]
rs28489650	0.88[ASN][1000 genomes]
rs28556805	0.90[ASN][1000 genomes]
rs28566485	0.87[ASN][1000 genomes]
rs28624935	0.83[ASN][1000 genomes]
rs28634635	0.86[EUR][1000 genomes]
rs28713382	0.90[ASN][1000 genomes]
rs56710422	0.83[ASN][1000 genomes]
rs57960122	0.83[ASN][1000 genomes]
rs58028943	0.85[ASN][1000 genomes]
rs60407782	0.83[ASN][1000 genomes]
rs60882420	0.83[ASN][1000 genomes]
rs7164144	0.82[EUR][1000 genomes]
rs7168406	0.84[EUR][1000 genomes]
rs7176412	0.87[CHB][hapmap]
rs731607	0.91[ASN][1000 genomes]
rs736780	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53150200-53152400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:53151200-53154600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:53151400-53159000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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