Variant report

Variant	rs6493598
Chromosome Location	chr15:53206223-53206224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11070921	0.96[CEU][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs11070935	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12899370	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs12900070	0.84[EUR][1000 genomes]
rs12912619	0.90[EUR][1000 genomes]
rs12913472	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899734	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs1899739	0.84[EUR][1000 genomes]
rs2068106	1.00[JPT][hapmap]
rs2120447	0.85[EUR][1000 genomes]
rs2165989	0.84[EUR][1000 genomes]
rs2414185	0.84[EUR][1000 genomes]
rs2440328	1.00[JPT][hapmap]
rs4776080	1.00[JPT][hapmap];0.95[MEX][hapmap]
rs6493597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493599	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8032241	0.81[EUR][1000 genomes]
rs8032248	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6493598	EID1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53204200-53207400	Weak transcription	Pancreas	Pancrea
2	chr15:53205000-53206600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:53205200-53207600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:53205200-53207600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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