Variant report

Variant	rs6495200
Chromosome Location	chr15:76611934-76611935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76605907..76608754-chr15:76611748..76613276,2	K562	blood:
2	chr15:76601284..76605220-chr15:76605803..76613495,17	K562	blood:
3	chr15:76605423..76608075-chr15:76608528..76612438,4	MCF-7	breast:
4	chr15:76611267..76613849-chr15:76627737..76630129,2	MCF-7	breast:
5	chr15:76610763..76613259-chr15:76615817..76618501,2	K562	blood:
6	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
7	chr15:76608689..76611193-chr15:76611835..76613495,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction
ENSG00000159556	Chromatin interaction
ENSG00000259514	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11858964	0.86[EUR][1000 genomes]
rs1801591	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1810348	0.88[EUR][1000 genomes]
rs1914816	0.85[ASN][1000 genomes]
rs2291449	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2456027	0.85[ASN][1000 genomes]
rs2456033	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456040	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2456042	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2456047	0.89[ASN][1000 genomes]
rs2456063	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2456066	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2456067	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2456070	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2456072	0.85[ASN][1000 genomes]
rs2456074	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2456075	0.85[ASN][1000 genomes]
rs2456078	0.85[ASN][1000 genomes]
rs2460146	0.85[ASN][1000 genomes]
rs2460151	0.85[ASN][1000 genomes]
rs2460153	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2460158	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2469211	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2469212	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2469214	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2469215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469533	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2469538	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2469539	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2469552	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469564	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2469573	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2938691	0.85[ASN][1000 genomes]
rs2956875	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957037	0.85[ASN][1000 genomes]
rs2959846	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4489970	0.88[EUR][1000 genomes]
rs4886490	0.88[EUR][1000 genomes]
rs7180257	0.87[EUR][1000 genomes]
rs8042255	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs874223	0.88[EUR][1000 genomes]
rs874224	0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6495200	ISL2	cis	Whole Blood	GTEx
rs6495200	ISL2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76604200-76613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:76604400-76613600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:76606600-76612200	Weak transcription	K562	blood
4	chr15:76607800-76619400	Weak transcription	Hela-S3	cervix
5	chr15:76608000-76612000	Weak transcription	A549	lung
6	chr15:76611800-76612000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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