Variant report

Variant	rs6495292
Chromosome Location	chr15:78645596-78645597
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78644250..78646860-chr15:78652765..78656018,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4887040	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78634600-78652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:78640800-78653200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:78641000-78650200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:78641000-78653400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:78641200-78650400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:78641200-78650400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:78641200-78650400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:78641200-78650400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:78641200-78650400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:78641200-78651400	Weak transcription	Fetal Kidney	kidney
11	chr15:78641400-78650400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:78641400-78650400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:78641400-78650400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:78641600-78650400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:78642400-78650400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:78643600-78646000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:78645000-78658200	Weak transcription	Right Atrium	heart
18	chr15:78645400-78645600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:78645400-78645800	Enhancers	HepG2	liver
20	chr15:78645400-78646000	Active TSS	ES-I3 Cell Line	embryonic stem cell

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