Variant report

Variant	rs6495320
Chromosome Location	chr15:79001438-79001439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1504547	1.00[MEX][hapmap]
rs16970108	1.00[MEX][hapmap]
rs6495328	1.00[MEX][hapmap]
rs7169877	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467283	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78988600-79001600	Weak transcription	Pancreas	Pancrea
2	chr15:79001400-79001600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
3	chr15:79001400-79001600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:79001400-79001600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:79001400-79001600	Enhancers	Liver	Liver
6	chr15:79001400-79001600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr15:79001400-79001600	Enhancers	Rectal Smooth Muscle	rectum
8	chr15:79001400-79001600	Bivalent/Poised TSS	A549	lung
9	chr15:79001400-79001800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
10	chr15:79001400-79001800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:79001400-79001800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:79001400-79001800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:79001400-79001800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
14	chr15:79001400-79002000	Bivalent Enhancer	Thymus	Thymus
15	chr15:79001400-79002200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:79001400-79002200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:79001400-79002200	Bivalent Enhancer	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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