Variant report

Variant	rs6495324
Chromosome Location	chr15:79049850-79049851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79047462..79049976-chr15:79054585..79057196,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11852970	0.86[AFR][1000 genomes]
rs60600009	0.90[AFR][1000 genomes]
rs7170119	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79040600-79060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:79042800-79055400	Enhancers	Right Ventricle	heart
3	chr15:79043600-79077800	Weak transcription	Brain Germinal Matrix	brain
4	chr15:79043800-79052000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:79043800-79053400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:79044000-79050000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:79044000-79052600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:79044200-79059000	Enhancers	Fetal Muscle Trunk	muscle
9	chr15:79045000-79055800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:79045000-79059000	Enhancers	Fetal Muscle Leg	muscle
11	chr15:79046200-79054600	Enhancers	Fetal Heart	heart
12	chr15:79046400-79063200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:79046800-79050200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:79047000-79053200	Enhancers	Stomach Smooth Muscle	stomach
15	chr15:79047200-79053600	Enhancers	NHDF-Ad	bronchial
16	chr15:79047200-79054600	Enhancers	HSMMtube	muscle
17	chr15:79048000-79050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:79048000-79050200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:79048000-79050200	Enhancers	HMEC	breast
20	chr15:79048200-79050200	Enhancers	NH-A	brain
21	chr15:79048200-79050400	Enhancers	Adipose Nuclei	Adipose
22	chr15:79048200-79051200	Enhancers	HUVEC	blood vessel
23	chr15:79048200-79055200	Enhancers	Primary B cells from cord blood	blood
24	chr15:79048200-79057000	Enhancers	Primary B cells from peripheral blood	blood
25	chr15:79048400-79050000	Enhancers	Aorta	Aorta
26	chr15:79048400-79050000	Enhancers	Brain Hippocampus Middle	brain
27	chr15:79048600-79050000	Enhancers	Brain Angular Gyrus	brain
28	chr15:79048600-79050200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:79048600-79050200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:79048600-79054600	Enhancers	Placenta	Placenta
31	chr15:79048600-79055000	Enhancers	Left Ventricle	heart
32	chr15:79048800-79051600	Weak transcription	Psoas Muscle	Psoas
33	chr15:79049200-79050000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:79049200-79050000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr15:79049200-79050000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:79049200-79050000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr15:79049200-79050000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:79049200-79050000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:79049200-79050000	ZNF genes & repeats	Fetal Stomach	stomach
40	chr15:79049200-79050000	Enhancers	Fetal Thymus	thymus
41	chr15:79049200-79050000	Enhancers	Rectal Smooth Muscle	rectum
42	chr15:79049200-79050000	Enhancers	Right Atrium	heart
43	chr15:79049200-79050000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr15:79049200-79050000	Enhancers	A549	lung
45	chr15:79049200-79050000	Enhancers	Hela-S3	cervix
46	chr15:79049200-79050000	Flanking Active TSS	HSMM	muscle
47	chr15:79049200-79050000	Enhancers	NHLF	lung
48	chr15:79049200-79050000	Flanking Active TSS	Osteobl	bone
49	chr15:79049200-79050200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:79049200-79050200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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