Variant report

Variant	rs6495342
Chromosome Location	chr15:79133038-79133039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79132097..79136188-chr15:79137055..79140077,3	K562	blood:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10519214	0.83[ASN][1000 genomes]
rs16970190	0.84[ASN][1000 genomes]
rs16970207	0.80[ASN][1000 genomes]
rs3803545	0.80[ASN][1000 genomes]
rs4073321	0.90[AMR][1000 genomes]
rs4778627	0.84[ASN][1000 genomes]
rs4778645	0.83[ASN][1000 genomes]
rs4778659	0.82[ASN][1000 genomes]
rs4778858	0.84[ASN][1000 genomes]
rs4778952	0.82[ASN][1000 genomes]
rs56144940	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56179040	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56963875	0.84[ASN][1000 genomes]
rs57185710	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57547095	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57923940	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58158830	0.90[AMR][1000 genomes]
rs58257692	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58858460	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59973885	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60589519	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61009187	0.84[ASN][1000 genomes]
rs61477430	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7171615	0.84[ASN][1000 genomes]
rs7402370	0.90[AMR][1000 genomes]
rs7402487	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7403094	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7403100	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79118400-79138400	Weak transcription	Right Atrium	heart
2	chr15:79130800-79135800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:79132200-79133400	Weak transcription	Aorta	Aorta
4	chr15:79132200-79134200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:79132400-79133600	Enhancers	Adipose Nuclei	Adipose
6	chr15:79132400-79133600	Enhancers	Placenta	Placenta
7	chr15:79132400-79134600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:79132600-79134000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:79132800-79133200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:79132800-79133400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:79132800-79133600	Enhancers	NHDF-Ad	bronchial
12	chr15:79132800-79133800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:79132800-79133800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:79132800-79134000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:79132800-79134000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:79132800-79134000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:79132800-79134000	Enhancers	HSMM	muscle
18	chr15:79132800-79134000	Enhancers	Osteobl	bone
19	chr15:79133000-79133200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:79133000-79133200	Flanking Active TSS	GM12878-XiMat	blood
21	chr15:79133000-79133200	Enhancers	NHLF	lung
22	chr15:79133000-79133400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:79133000-79133400	Enhancers	Fetal Muscle Trunk	muscle
24	chr15:79133000-79133400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr15:79133000-79133600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:79133000-79133600	Enhancers	Esophagus	oesophagus
27	chr15:79133000-79133600	Enhancers	Fetal Lung	lung
28	chr15:79133000-79133600	Enhancers	Fetal Muscle Leg	muscle
29	chr15:79133000-79133600	Enhancers	Stomach Smooth Muscle	stomach
30	chr15:79133000-79133800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:79133000-79133800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:79133000-79133800	Enhancers	Spleen	Spleen
33	chr15:79133000-79133800	Enhancers	NH-A	brain
34	chr15:79133000-79134000	Enhancers	Primary B cells from peripheral blood	blood
35	chr15:79133000-79134000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:79133000-79134000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr15:79133000-79134000	Enhancers	HSMMtube	muscle
38	chr15:79133000-79134800	Enhancers	Fetal Stomach	stomach

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