Variant report

Variant	rs6495661
Chromosome Location	chr15:34630397-34630398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr15:34629078-34630455	GM12878	blood:	n/a	n/a
2	SIX5	chr15:34629961-34630715	A549	lung:	n/a	chr15:34630333-34630342 chr15:34630331-34630340
3	PBX3	chr15:34629660-34630494	A549	lung:	n/a	n/a
4	RELA	chr15:34628505-34630448	GM15510	blood:	n/a	n/a
5	MXI1	chr15:34628844-34630725	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr15:34629787-34630561	HepG2	liver:	n/a	n/a
7	CHD2	chr15:34629853-34630510	K562	blood:	n/a	n/a
8	MAX	chr15:34629612-34630526	ECC-1	luminal epithelium:	n/a	n/a
9	POLR2A	chr15:34626309-34630576	PBDE	blood:	n/a	n/a
10	ZNF384	chr15:34630252-34630440	K562	blood:	n/a	n/a
11	TCF12	chr15:34629350-34630630	A549	lung:	n/a	chr15:34629886-34629896 chr15:34629934-34629941
12	CREB1	chr15:34629662-34630535	K562	blood:	n/a	n/a
13	TAF1	chr15:34629649-34630565	H1-hESC	embryonic stem cell:	n/a	n/a
14	ETS1	chr15:34630000-34630561	K562	blood:	n/a	chr15:34630330-34630343 chr15:34630331-34630344
15	HDAC2	chr15:34629766-34630443	HepG2	liver:	n/a	n/a
16	IRF1	chr15:34629900-34630517	K562	blood:	n/a	chr15:34630220-34630234 chr15:34630471-34630481 chr15:34630293-34630307
17	MAX	chr15:34629736-34630531	SK-N-SH	brain:	n/a	n/a
18	POLR2A	chr15:34629655-34630526	HL-60	blood:	n/a	n/a
19	FOXP2	chr15:34629784-34630402	SK-N-MC	brain:	n/a	n/a
20	SIX5	chr15:34630125-34630492	K562	blood:	n/a	chr15:34630333-34630342 chr15:34630331-34630340
21	TAF1	chr15:34629956-34630496	K562	blood:	n/a	n/a
22	MAX	chr15:34629623-34630504	H1-hESC	embryonic stem cell:	n/a	n/a
23	RUNX3	chr15:34626036-34630468	GM12878	blood:	n/a	chr15:34627289-34627298 chr15:34627289-34627298
24	MAX	chr15:34629780-34630517	MCF-7	breast:	n/a	n/a
25	POLR2A	chr15:34629366-34630545	HepG2	liver:	n/a	n/a
26	CHD2	chr15:34629990-34630462	H1-hESC	embryonic stem cell:	n/a	n/a
27	GTF2F1	chr15:34630237-34630500	Hela-S3	cervix:	n/a	n/a
28	ATF2	chr15:34628366-34630566	GM12878	blood:	n/a	n/a
29	SIX5	chr15:34630081-34630524	GM12878	blood:	n/a	chr15:34630333-34630342 chr15:34630331-34630340
30	TCF12	chr15:34629770-34630501	ECC-1	luminal epithelium:	n/a	chr15:34629886-34629896 chr15:34629934-34629941
31	TAF1	chr15:34629966-34630523	SK-N-SH	brain:	n/a	n/a
32	CREB1	chr15:34629571-34630589	GM12878	blood:	n/a	n/a
33	YY1	chr15:34630106-34630565	ECC-1	luminal epithelium:	n/a	chr15:34630233-34630247 chr15:34630230-34630244 chr15:34630266-34630280 chr15:34630226-34630237
34	POLR2A	chr15:34625969-34630628	GM12878	blood:	n/a	n/a
35	RFX5	chr15:34629875-34630501	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr15:34629778-34630487	A549	lung:	n/a	n/a
37	POLR2A	chr15:34629720-34630583	PFSK-1	brain:	n/a	n/a
38	MYC	chr15:34629891-34630468	MCF-7	breast:	n/a	n/a
39	MAZ	chr15:34629807-34630572	HepG2	liver:	n/a	n/a
40	SIN3AK20	chr15:34629729-34630552	K562	blood:	n/a	n/a
41	ZNF143	chr15:34629896-34630518	Hela-S3	cervix:	n/a	chr15:34630017-34630027 chr15:34630121-34630139 chr15:34630324-34630342 chr15:34630434-34630444 chr15:34630331-34630340
42	NRF1	chr15:34629825-34630463	H1-hESC	embryonic stem cell:	n/a	chr15:34630262-34630273 chr15:34630289-34630298 chr15:34630263-34630274 chr15:34630260-34630274
43	POLR2A	chr15:34629518-34630925	K562	blood:	n/a	n/a
44	MXI1	chr15:34629453-34630639	IMR90	lung:	n/a	n/a
45	MYC	chr15:34629941-34630508	MCF10A-Er-Src	breast:	n/a	n/a
46	CTCF	chr15:34630280-34630430	WERI-Rb-1	eye:	n/a	n/a
47	POLR2A	chr15:34629810-34630654	U87	brain:	n/a	n/a
48	E2F1	chr15:34629785-34630448	Hela-S3	cervix:	n/a	chr15:34630023-34630033 chr15:34629929-34629939 chr15:34630264-34630273 chr15:34630230-34630240
49	POLR2A	chr15:34629788-34630498	H1-hESC	embryonic stem cell:	n/a	n/a
50	POLR2A	chr15:34629929-34630793	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34630356-34630406	PrEC	prostate:	n/a
2	chr15:34630351-34630401	HPAEpiC	pulmonary alveolar:	n/a
3	chr15:34630356-34630406	T-47D	breast:	n/a
4	chr15:34630351-34630401	BE2_C	brain:	n/a
5	chr15:34630395-34630445	NB4	blood:	n/a
6	chr15:34630351-34630401	HL-60	blood:	n/a
7	chr15:34630351-34630401	HCPEpiC	choroid plexus:	n/a
8	chr15:34630356-34630406	U87	brain:	n/a
9	chr15:34630351-34630401	HNPCEpiC	eye:	n/a
10	chr15:34630356-34630406	HIPEpiC	eye:	n/a
11	chr15:34630356-34630406	HCPEpiC	choroid plexus:	n/a
12	chr15:34630356-34630406	HPAEpiC	pulmonary alveolar:	n/a
13	chr15:34630351-34630401	NH-A	brain:	n/a
14	chr15:34630356-34630406	ProgFib	skin:	n/a
15	chr15:34630351-34630401	PFSK-1	brain:	n/a
16	chr15:34630356-34630406	SK-N-SH	brain:	n/a
17	chr15:34630395-34630445	ovcar-3	ovarian:	n/a
18	chr15:34630356-34630406	MCF10A-Er-Src	breast:	n/a
19	chr15:34630351-34630401	GM12891	blood:	n/a
20	chr15:34630395-34630445	HCPEpiC	choroid plexus:	n/a
21	chr15:34630395-34630445	GM19239	blood:	n/a
22	chr15:34630356-34630406	GM12891	blood:	n/a
23	chr15:34630351-34630401	AG09309	skin:	n/a
24	chr15:34630395-34630445	HMEC	breast:	n/a
25	chr15:34630395-34630445	Hela-S3	cervix:	n/a
26	chr15:34630395-34630445	AG04449	skin:	fetal
27	chr15:34630356-34630406	HUVEC	blood vessel:	n/a
28	chr15:34630395-34630445	ECC-1	luminal epithelium:	n/a
29	chr15:34630356-34630406	HRPEpiC	eye:	n/a
30	chr15:34630356-34630406	Hela-S3	cervix:	n/a
31	chr15:34630356-34630406	HRE	kidney:	n/a
32	chr15:34630351-34630401	HepG2	liver:	n/a
33	chr15:34630356-34630406	GM12878	blood:	n/a
34	chr15:34630351-34630401	T-47D	breast:	n/a
35	chr15:34630395-34630445	SK-N-SH_RA	brain:	n/a
36	chr15:34630395-34630445	A549	lung:	n/a
37	chr15:34630356-34630406	AG09319	gingival:	n/a
38	chr15:34630351-34630401	K562	blood:	n/a
39	chr15:34630395-34630445	HL-60	blood:	n/a
40	chr15:34630395-34630445	CMK	blood:	n/a
41	chr15:34630351-34630401	SK-N-SH_RA	brain:	n/a
42	chr15:34630395-34630445	HPAEpiC	pulmonary alveolar:	n/a
43	chr15:34630356-34630406	AG10803	skin:	n/a
44	chr15:34630351-34630401	SK-N-SH	brain:	n/a
45	chr15:34630395-34630445	AoSMC	blood vessel:	n/a
46	chr15:34630356-34630406	LNCaP	prostate:	n/a
47	chr15:34630395-34630445	ProgFib	skin:	n/a
48	chr15:34630395-34630445	NHBE	bronchial:	n/a
49	chr15:34630356-34630406	GM19239	blood:	n/a
50	chr15:34630351-34630401	AG09319	gingival:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:34630189..34630837-chr8:95835513..95836045,2	Hela-S3	cervix:
2	chr15:34628679..34631455-chr15:34874185..34875808,2	K562	blood:
3	chr15:34516899..34519877-chr15:34627913..34631706,5	K562	blood:
4	chr15:34629809..34630410-chr9:130565597..130566542,2	Hela-S3	cervix:
5	chr15:34499795..34502298-chr15:34629083..34632074,3	K562	blood:
6	chr15:34499795..34503886-chr15:34627014..34631557,6	K562	blood:
7	chr15:34392784..34394847-chr15:34629052..34631553,2	K562	blood:
8	chr15:34629384..34632183-chr15:34656418..34659243,3	MCF-7	breast:
9	chr15:34628783..34632143-chr15:34633761..34637127,4	MCF-7	breast:
10	chr15:34516899..34519877-chr15:34629611..34631706,2	K562	blood:
11	chr15:34531119..34534573-chr15:34628473..34631118,3	MCF-7	breast:

Variant related genes	Relation type
SLC12A6	TF binding region
SLC12A6	CpG island
ENSG00000184507	Chromatin interaction
ENSG00000182405	Chromatin interaction
ENSG00000215252	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000182117	Chromatin interaction
ENSG00000136877	Chromatin interaction
ENSG00000140199	Chromatin interaction
ENSG00000164941	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 146 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs104017	0.90[ASN][1000 genomes]
rs1045194	0.85[AMR][1000 genomes]
rs1045238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631094	0.85[ASN][1000 genomes]
rs12591967	0.83[ASN][1000 genomes]
rs12592913	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12593384	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595504	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs168335	0.80[ASN][1000 genomes]
rs16958910	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16958954	0.84[ASN][1000 genomes]
rs16958995	0.91[ASN][1000 genomes]
rs16959012	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959014	0.95[ASN][1000 genomes]
rs16959020	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16959021	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs180886	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1845773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186987	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126421	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2219668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615357	0.91[ASN][1000 genomes]
rs2644243	0.82[ASN][1000 genomes]
rs2644245	0.88[ASN][1000 genomes]
rs28539755	0.92[ASN][1000 genomes]
rs3063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34639726	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347805	0.83[ASN][1000 genomes]
rs347806	0.80[ASN][1000 genomes]
rs347807	0.80[ASN][1000 genomes]
rs347817	0.81[ASN][1000 genomes]
rs347827	0.88[ASN][1000 genomes]
rs347830	0.90[ASN][1000 genomes]
rs347831	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347832	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347833	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347834	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347835	0.82[ASN][1000 genomes]
rs347836	0.90[ASN][1000 genomes]
rs347837	0.94[ASN][1000 genomes]
rs347838	0.94[ASN][1000 genomes]
rs347842	0.84[ASN][1000 genomes]
rs347843	0.84[ASN][1000 genomes]
rs347847	0.82[ASN][1000 genomes]
rs347849	0.82[ASN][1000 genomes]
rs347851	0.82[ASN][1000 genomes]
rs347858	0.85[ASN][1000 genomes]
rs347861	0.81[ASN][1000 genomes]
rs380248	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs405080	0.82[ASN][1000 genomes]
rs422388	0.94[ASN][1000 genomes]
rs4569235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745608	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56057955	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388838	0.83[AFR][1000 genomes]
rs56762274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57715165	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57875866	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58343025	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58401365	0.80[ASN][1000 genomes]
rs59375529	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59452641	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59802332	0.83[AFR][1000 genomes]
rs59861881	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60114685	0.84[ASN][1000 genomes]
rs60156693	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60539207	0.84[ASN][1000 genomes]
rs61376537	0.85[ASN][1000 genomes]
rs6495660	0.89[ASN][1000 genomes]
rs6495662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163195	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163919	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7166043	0.82[ASN][1000 genomes]
rs7166066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7169857	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7170785	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7175028	0.92[ASN][1000 genomes]
rs7176009	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176426	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7181260	0.80[AFR][1000 genomes]
rs7182584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72486679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374434	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73374455	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73374473	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73374475	0.95[ASN][1000 genomes]
rs73374477	0.95[ASN][1000 genomes]
rs73374490	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374491	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374493	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374500	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374502	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376010	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73390084	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73392004	0.84[ASN][1000 genomes]
rs7495538	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs756086	0.90[ASN][1000 genomes]
rs8023583	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8025057	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8031145	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031147	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031404	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8031958	0.95[ASN][1000 genomes]
rs8031961	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8032347	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8033032	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8037379	0.95[ASN][1000 genomes]
rs8038177	0.90[ASN][1000 genomes]
rs8042163	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8043005	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs924065	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9630418	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972305	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972323	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
24	nsv1039577	chr15:34624178-34962093	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
25	nsv542344	chr15:34624178-34962093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
26	nsv542345	chr15:34626815-34841586	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
27	nsv542346	chr15:34627015-34841447	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
28	nsv915918	chr15:34627109-34841422	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
29	nsv916680	chr15:34627109-34964198	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
30	esv1822549	chr15:34628041-34909164	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
31	nsv1038524	chr15:34628041-34962093	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
32	nsv542347	chr15:34628041-34962093	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs6495661	SLC12A6	cis	Thyroid	GTEx
rs6495661	NOP10	cis	Thyroid	GTEx
rs6495661	NOP10	cis	Nerve Tibial	GTEx
rs6495661	NOP10	cis	Artery Tibial	GTEx
rs6495661	NOP10	cis	Heart Left Ventricle	GTEx
rs6495661	NOP10	cis	Muscle Skeletal	GTEx
rs6495661	NOP10	cis	Esophagus Muscularis	GTEx
rs6495661	NOP10	cis	Skin Sun Exposed Lower leg	GTEx
rs6495661	NOP10	cis	Esophagus Mucosa	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34626400-34630400	Active TSS	Rectal Smooth Muscle	rectum
2	chr15:34626400-34630600	Active TSS	Aorta	Aorta
3	chr15:34628600-34630400	Active TSS	Fetal Intestine Small	intestine
4	chr15:34628600-34630800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr15:34628800-34630400	Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr15:34628800-34630400	Active TSS	HSMMtube	muscle
7	chr15:34629000-34630400	Active TSS	Primary T killer memory cells from peripheral blood	blood
8	chr15:34629000-34630400	Active TSS	Thymus	Thymus
9	chr15:34629000-34630600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr15:34629000-34630600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:34629000-34630600	Active TSS	GM12878-XiMat	blood
12	chr15:34629000-34630800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr15:34629000-34630800	Active TSS	H1 Cell Line	embryonic stem cell
14	chr15:34629000-34630800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr15:34629000-34630800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr15:34629000-34631000	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr15:34629200-34630400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:34629200-34630400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:34629200-34630400	Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr15:34629200-34630400	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr15:34629200-34630600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:34629200-34630600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:34629200-34630600	Active TSS	Fetal Intestine Large	intestine
24	chr15:34629200-34630600	Active TSS	Fetal Kidney	kidney
25	chr15:34629200-34630800	Active TSS	H9 Cell Line	embryonic stem cell
26	chr15:34629200-34630800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:34629200-34630800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:34629400-34630400	Active TSS	Primary monocytes fromperipheralblood	blood
29	chr15:34629400-34630400	Active TSS	Primary B cells from peripheral blood	blood
30	chr15:34629400-34630400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:34629400-34630400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:34629400-34630400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr15:34629400-34630400	Active TSS	Brain Substantia Nigra	brain
34	chr15:34629400-34630400	Active TSS	Lung	lung
35	chr15:34629400-34630400	Active TSS	Pancreas	Pancrea
36	chr15:34629400-34630600	Active TSS	Primary T cells from cord blood	blood
37	chr15:34629400-34630600	Active TSS	Brain Cingulate Gyrus	brain
38	chr15:34629400-34630600	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr15:34629400-34630600	Active TSS	Colon Smooth Muscle	Colon
40	chr15:34629400-34630600	Active TSS	Left Ventricle	heart
41	chr15:34629400-34630600	Active TSS	Ovary	ovary
42	chr15:34629400-34630600	Active TSS	Placenta Amnion	Placenta Amnion
43	chr15:34629400-34630600	Active TSS	Psoas Muscle	Psoas
44	chr15:34629400-34630800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:34629400-34630800	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr15:34629400-34630800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:34629600-34630400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:34629600-34630400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:34629600-34630400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:34629600-34630400	Active TSS	Primary B cells from cord blood	blood

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