Variant report

Variant	rs6495662
Chromosome Location	chr15:34630582-34630583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIX5	chr15:34629961-34630715	A549	lung:	n/a	chr15:34630333-34630342 chr15:34630331-34630340
2	MXI1	chr15:34628844-34630725	SK-N-SH	brain:	n/a	n/a
3	TCF12	chr15:34629350-34630630	A549	lung:	n/a	chr15:34629886-34629896 chr15:34629934-34629941
4	CREB1	chr15:34629571-34630589	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:34625969-34630628	GM12878	blood:	n/a	n/a
6	POLR2A	chr15:34629720-34630583	PFSK-1	brain:	n/a	n/a
7	POLR2A	chr15:34629518-34630925	K562	blood:	n/a	n/a
8	MXI1	chr15:34629453-34630639	IMR90	lung:	n/a	n/a
9	POLR2A	chr15:34629810-34630654	U87	brain:	n/a	n/a
10	POLR2A	chr15:34629929-34630793	K562	blood:	n/a	n/a
11	HCFC1	chr15:34629519-34630592	K562	blood:	n/a	n/a
12	POLR2A	chr15:34629421-34630597	H1-neurons	neurons:	n/a	n/a
13	POLR2A	chr15:34629608-34631302	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr15:34629890-34630639	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr15:34629951-34630630	HCT-116	colon:	n/a	n/a
16	POLR2A	chr15:34629659-34630605	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr15:34629907-34630625	IMR90	lung:	n/a	n/a
18	MAZ	chr15:34629091-34630781	IMR90	lung:	n/a	n/a
19	POLR2A	chr15:34629605-34630695	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr15:34629893-34630586	K562	blood:	n/a	n/a
21	POLR2A	chr15:34629247-34630894	Hela-S3	cervix:	n/a	n/a
22	SP1	chr15:34630050-34630588	A549	lung:	n/a	chr15:34630293-34630305 chr15:34630295-34630304 chr15:34630223-34630232 chr15:34630294-34630303 chr15:34630224-34630233 chr15:34630222-34630234 chr15:34630222-34630234 chr15:34630295-34630304 chr15:34630293-34630305
23	POLR2A	chr15:34625400-34630593	GM12878	blood:	n/a	n/a
24	YY1	chr15:34630280-34630677	SK-N-SH	brain:	n/a	n/a
25	POLR2A	chr15:34629356-34632828	K562	blood:	n/a	n/a
26	REST	chr15:34629348-34630690	H1-neurons	neurons:	n/a	chr15:34629599-34629612 chr15:34629675-34629688 chr15:34629985-34630005 chr15:34630224-34630237 chr15:34629889-34629902
27	ELF1	chr15:34629495-34630914	GM12878	blood:	n/a	chr15:34629779-34629788 chr15:34630013-34630022 chr15:34629801-34629813
28	POLR2A	chr15:34628395-34630639	GM12892	blood:	n/a	n/a
29	POLR2A	chr15:34629116-34630592	H1-hESC	embryonic stem cell:	n/a	n/a
30	HA-E2F1	chr15:34629517-34630618	MCF-7	breast:	n/a	chr15:34630023-34630033 chr15:34629929-34629939 chr15:34630264-34630273 chr15:34630230-34630240
31	POLR2A	chr15:34629743-34630693	SK-N-SH	brain:	n/a	n/a
32	POLR2A	chr15:34625408-34630714	GM12892	blood:	n/a	n/a
33	ZNF143	chr15:34629953-34630587	K562	blood:	n/a	chr15:34630017-34630027 chr15:34630121-34630139 chr15:34630324-34630342 chr15:34630434-34630444 chr15:34630331-34630340
34	HCFC1	chr15:34628921-34630930	Hela-S3	cervix:	n/a	n/a
35	MYC	chr15:34629122-34630814	A549	lung:	n/a	n/a
36	POLR2A	chr15:34629542-34630687	HUVEC	blood vessel:	n/a	n/a
37	POLR2A	chr15:34629769-34630641	MCF10A-Er-Src	breast:	n/a	n/a
38	POLR2A	chr15:34628401-34630607	GM12892	blood:	n/a	n/a
39	MAX	chr15:34629434-34630709	A549	lung:	n/a	n/a
40	POLR2A	chr15:34629672-34630645	Hela-S3	cervix:	n/a	n/a
41	MTA3	chr15:34625449-34630603	GM12878	blood:	n/a	n/a
42	POLR2A	chr15:34629618-34630698	SK-N-MC	brain:	n/a	n/a
43	POLR2A	chr15:34629691-34630949	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr15:34629461-34630894	MCF-7	breast:	n/a	n/a
45	POLR2A	chr15:34629747-34631491	PFSK-1	brain:	n/a	n/a
46	POLR2A	chr15:34629618-34630607	Hela-S3	cervix:	n/a	n/a
47	NRF1	chr15:34629397-34630715	SK-N-SH	brain:	n/a	chr15:34630262-34630273 chr15:34630289-34630298 chr15:34630263-34630274 chr15:34630260-34630274
48	POLR2A	chr15:34629787-34630614	MCF-7	breast:	n/a	n/a
49	POLR2A	chr15:34625492-34632011	GM12891	blood:	n/a	n/a
50	POLR2A	chr15:34630177-34630584	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:34630189..34630837-chr8:95835513..95836045,2	Hela-S3	cervix:
2	chr15:34628679..34631455-chr15:34874185..34875808,2	K562	blood:
3	chr15:34516899..34519877-chr15:34627913..34631706,5	K562	blood:
4	chr15:34499795..34502298-chr15:34629083..34632074,3	K562	blood:
5	chr15:34537264..34538775-chr15:34630523..34633358,2	K562	blood:
6	chr15:34499795..34503886-chr15:34627014..34631557,6	K562	blood:
7	chr15:34392784..34394847-chr15:34629052..34631553,2	K562	blood:
8	chr15:34629384..34632183-chr15:34656418..34659243,3	MCF-7	breast:
9	chr15:34628783..34632143-chr15:34633761..34637127,4	MCF-7	breast:
10	chr15:34516899..34519877-chr15:34629611..34631706,2	K562	blood:
11	chr15:34531119..34534573-chr15:34628473..34631118,3	MCF-7	breast:

Variant related genes	Relation type
NUTM1	TF binding region
SLC12A6	TF binding region
ENSG00000182405	Chromatin interaction
ENSG00000164941	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000182117	Chromatin interaction
ENSG00000184507	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000215252	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000140199	Chromatin interaction
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 165 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs104017	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1045194	0.85[AMR][1000 genomes]
rs1045204	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs1045238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1133154	0.87[GIH][hapmap]
rs11631094	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs12591967	0.82[ASW][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.94[YRI][hapmap];0.83[ASN][1000 genomes]
rs12592913	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12593384	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594569	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs12595504	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs168335	0.80[ASN][1000 genomes]
rs16958878	0.87[GIH][hapmap]
rs16958910	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16958954	0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs16958995	0.87[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs16959012	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959014	0.95[ASN][1000 genomes]
rs16959020	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16959021	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs180886	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1845773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186987	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2085966	0.81[CHB][hapmap]
rs2126421	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2219668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615357	0.91[ASN][1000 genomes]
rs2644243	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs2644245	0.88[ASN][1000 genomes]
rs2644247	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs2705343	0.81[CHD][hapmap]
rs2705348	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs28539755	0.92[ASN][1000 genomes]
rs3063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34639726	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs347805	0.83[ASN][1000 genomes]
rs347806	0.80[ASN][1000 genomes]
rs347807	0.80[ASN][1000 genomes]
rs347817	0.81[ASN][1000 genomes]
rs347818	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs347819	0.81[CHB][hapmap]
rs347827	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs347830	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs347831	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347832	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347833	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347834	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347835	0.82[ASN][1000 genomes]
rs347836	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs347837	0.94[ASN][1000 genomes]
rs347838	0.94[ASN][1000 genomes]
rs347842	0.94[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs347843	0.84[ASN][1000 genomes]
rs347845	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs347846	0.81[CHB][hapmap]
rs347847	0.82[ASN][1000 genomes]
rs347848	0.94[CHB][hapmap]
rs347849	0.94[CHB][hapmap];0.94[CHD][hapmap];0.82[ASN][1000 genomes]
rs347851	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs347858	0.85[ASN][1000 genomes]
rs347861	0.81[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs347866	0.81[CHB][hapmap]
rs347867	0.81[CHB][hapmap]
rs380248	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs405080	0.82[ASN][1000 genomes]
rs422388	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs4238572	0.84[GIH][hapmap]
rs426634	0.94[CHB][hapmap];0.92[CHD][hapmap]
rs436552	0.81[CHB][hapmap];0.89[CHD][hapmap]
rs4569235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745608	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56057955	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388838	0.83[AFR][1000 genomes]
rs56762274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57715165	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57875866	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58343025	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58401365	0.80[ASN][1000 genomes]
rs59375529	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59452641	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59802332	0.83[AFR][1000 genomes]
rs59861881	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60114685	0.84[ASN][1000 genomes]
rs60156693	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60539207	0.84[ASN][1000 genomes]
rs61376537	0.85[ASN][1000 genomes]
rs6495660	0.93[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs6495661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163195	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163919	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7164902	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs7166043	0.82[ASN][1000 genomes]
rs7166066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7169857	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7170785	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7175028	0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs7176009	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7176426	0.94[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7181260	0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs7182584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72486679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374434	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73374455	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73374473	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73374475	0.95[ASN][1000 genomes]
rs73374477	0.95[ASN][1000 genomes]
rs73374490	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374491	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374493	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73374500	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374502	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376010	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73390084	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73392004	0.84[ASN][1000 genomes]
rs7495538	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs756086	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs8023583	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8025057	1.00[ASW][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8031145	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031147	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8031404	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8031958	0.95[ASN][1000 genomes]
rs8031961	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8032347	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8033032	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8037379	0.95[ASN][1000 genomes]
rs8038177	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs8042163	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8043005	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs924065	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9630418	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972305	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972323	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
24	nsv1039577	chr15:34624178-34962093	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
25	nsv542344	chr15:34624178-34962093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
26	nsv542345	chr15:34626815-34841586	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
27	nsv542346	chr15:34627015-34841447	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
28	nsv915918	chr15:34627109-34841422	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
29	nsv916680	chr15:34627109-34964198	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
30	esv1822549	chr15:34628041-34909164	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
31	nsv1038524	chr15:34628041-34962093	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
32	nsv542347	chr15:34628041-34962093	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs6495662	NOP10	cis	Nerve Tibial	GTEx
rs6495662	OTUD7A	cis	cerebellum	SCAN
rs6495662	PGBD4	cis	cerebellum	SCAN
rs6495662	NOP10	cis	Muscle Skeletal	GTEx
rs6495662	NOP10	cis	Esophagus Mucosa	GTEx
rs6495662	NOP10	cis	cerebellum	SCAN
rs6495662	NOP10	cis	Thyroid	GTEx
rs6495662	NOP10	cis	Esophagus Muscularis	GTEx
rs6495662	NOP10	cis	Artery Tibial	GTEx
rs6495662	SLC12A6	cis	Thyroid	GTEx
rs6495662	NOP10	cis	Heart Left Ventricle	GTEx
rs6495662	TMEM85	cis	cerebellum	SCAN
rs6495662	NOP10	cis	parietal	SCAN
rs6495662	NOP10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34626400-34630600	Active TSS	Aorta	Aorta
2	chr15:34628600-34630800	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr15:34629000-34630600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr15:34629000-34630600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:34629000-34630600	Active TSS	GM12878-XiMat	blood
6	chr15:34629000-34630800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr15:34629000-34630800	Active TSS	H1 Cell Line	embryonic stem cell
8	chr15:34629000-34630800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr15:34629000-34630800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr15:34629000-34631000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr15:34629200-34630600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:34629200-34630600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:34629200-34630600	Active TSS	Fetal Intestine Large	intestine
14	chr15:34629200-34630600	Active TSS	Fetal Kidney	kidney
15	chr15:34629200-34630800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr15:34629200-34630800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:34629200-34630800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:34629400-34630600	Active TSS	Primary T cells from cord blood	blood
19	chr15:34629400-34630600	Active TSS	Brain Cingulate Gyrus	brain
20	chr15:34629400-34630600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr15:34629400-34630600	Active TSS	Colon Smooth Muscle	Colon
22	chr15:34629400-34630600	Active TSS	Left Ventricle	heart
23	chr15:34629400-34630600	Active TSS	Ovary	ovary
24	chr15:34629400-34630600	Active TSS	Placenta Amnion	Placenta Amnion
25	chr15:34629400-34630600	Active TSS	Psoas Muscle	Psoas
26	chr15:34629400-34630800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:34629400-34630800	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr15:34629400-34630800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:34629600-34630600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:34629600-34630600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:34629600-34630600	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr15:34629600-34630600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:34629600-34630600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:34629600-34630600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:34629600-34630600	Active TSS	Brain Angular Gyrus	brain
36	chr15:34629600-34630600	Active TSS	Brain Hippocampus Middle	brain
37	chr15:34629600-34630600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr15:34629600-34630600	Active TSS	Esophagus	oesophagus
39	chr15:34629600-34630600	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr15:34629600-34630600	Active TSS	Right Ventricle	heart
41	chr15:34629600-34630600	Active TSS	HepG2	liver
42	chr15:34629600-34630600	Active TSS	HSMM	muscle
43	chr15:34629600-34630800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:34629600-34630800	Active TSS	Brain Anterior Caudate	brain
45	chr15:34629600-34630800	Active TSS	Fetal Brain Female	brain
46	chr15:34629600-34630800	Active TSS	Stomach Smooth Muscle	stomach
47	chr15:34629600-34630800	Active TSS	Hela-S3	cervix
48	chr15:34629600-34630800	Active TSS	Osteobl	bone
49	chr15:34629600-34631000	Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr15:34629600-34631200	Active TSS	HUES64 Cell Line	embryonic stem cell

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