Variant report

Variant	rs650030
Chromosome Location	chr7:124803703-124803704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1009450	0.84[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs10464674	0.96[ASN][1000 genomes]
rs11532793	0.83[ASN][1000 genomes]
rs11534064	0.90[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11536526	0.84[ASN][1000 genomes]
rs1525613	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs17325193	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs17327014	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs17327181	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs17327715	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs17387389	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17387591	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs2054586	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2170352	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2293346	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3214004	0.86[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs4142718	0.81[ASN][1000 genomes]
rs55723877	0.90[ASN][1000 genomes]
rs55859595	0.89[ASN][1000 genomes]
rs55890146	0.84[ASN][1000 genomes]
rs55905546	0.89[ASN][1000 genomes]
rs56012154	0.89[ASN][1000 genomes]
rs56056794	0.89[ASN][1000 genomes]
rs56069273	0.86[ASN][1000 genomes]
rs56216989	0.81[ASN][1000 genomes]
rs56269941	0.86[ASN][1000 genomes]
rs66478705	0.96[ASN][1000 genomes]
rs66756015	0.81[ASN][1000 genomes]
rs66852389	0.81[ASN][1000 genomes]
rs669064	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap]
rs67277928	0.85[ASN][1000 genomes]
rs67607629	0.86[ASN][1000 genomes]
rs67680878	0.96[ASN][1000 genomes]
rs67817822	0.86[ASN][1000 genomes]
rs685345	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6945199	0.84[ASN][1000 genomes]
rs73227531	0.96[ASN][1000 genomes]
rs792624	0.92[ASW][hapmap];0.89[LWK][hapmap];0.96[YRI][hapmap]
rs792629	0.92[ASW][hapmap];0.89[LWK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs9640831	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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