Variant report

Variant	rs6510527
Chromosome Location	chr19:36684491-36684492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10409091	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10411031	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10416179	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10416237	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10417892	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12973781	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2070132	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2287897	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2287898	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2310856	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2432039	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2432042	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2432043	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2432045	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2432049	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2432051	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2432052	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2432054	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2438514	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2438517	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28408024	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2918375	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2918378	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2918379	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2918380	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2972321	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2972537	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2972539	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2972542	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4239585	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4806283	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7251727	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8102020	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv2752541	chr19:36563057-36690874	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv579425	chr19:36643695-36685753	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36653200-36684600	Weak transcription	Aorta	Aorta
2	chr19:36661800-36684600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr19:36661800-36686800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:36662000-36684800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr19:36669200-36685000	Weak transcription	Stomach Mucosa	stomach
6	chr19:36669600-36704800	Weak transcription	Psoas Muscle	Psoas
7	chr19:36673800-36704800	Weak transcription	Fetal Kidney	kidney
8	chr19:36674000-36685200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr19:36674000-36704800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:36674200-36685000	Weak transcription	Fetal Thymus	thymus
11	chr19:36674200-36685600	Weak transcription	Colon Smooth Muscle	Colon
12	chr19:36674200-36687200	Weak transcription	GM12878-XiMat	blood
13	chr19:36674400-36684600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr19:36674400-36684600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr19:36674400-36684600	Weak transcription	Fetal Intestine Large	intestine
16	chr19:36674400-36684600	Weak transcription	Left Ventricle	heart
17	chr19:36674400-36684600	Weak transcription	Pancreas	Pancrea
18	chr19:36674400-36684800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr19:36674400-36684800	Weak transcription	Right Ventricle	heart
20	chr19:36674400-36685200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr19:36674400-36685200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr19:36674400-36690000	Weak transcription	NHDF-Ad	bronchial
23	chr19:36674400-36704600	Weak transcription	Fetal Brain Male	brain
24	chr19:36674600-36684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr19:36674600-36684600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:36674600-36684600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr19:36674600-36684600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:36674600-36684600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr19:36674600-36684600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr19:36674600-36684600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr19:36674600-36684600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr19:36674600-36684600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr19:36674600-36684600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr19:36674600-36684600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:36674600-36684600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr19:36674600-36684600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr19:36674600-36684600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr19:36674600-36684600	Weak transcription	Adipose Nuclei	Adipose
39	chr19:36674600-36684600	Weak transcription	Brain Anterior Caudate	brain
40	chr19:36674600-36684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr19:36674600-36684600	Weak transcription	Brain Substantia Nigra	brain
42	chr19:36674600-36684600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr19:36674600-36684600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr19:36674600-36684600	Weak transcription	Gastric	stomach
45	chr19:36674600-36684600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr19:36674600-36684600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr19:36674600-36684600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr19:36674600-36684600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr19:36674600-36684600	Weak transcription	Spleen	Spleen
50	chr19:36674600-36684600	Weak transcription	HSMMtube	muscle

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