Variant report

Variant	rs651465
Chromosome Location	chr6:150735153-150735154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4870512	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs587968	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589890	0.98[ASN][1000 genomes]
rs603815	0.92[EUR][1000 genomes]
rs616195	0.85[ASN][1000 genomes]
rs646636	0.92[EUR][1000 genomes]
rs648460	0.92[EUR][1000 genomes]
rs649677	0.92[EUR][1000 genomes]
rs649744	0.92[EUR][1000 genomes]
rs653803	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs660484	0.82[EUR][1000 genomes]
rs665670	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs681442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs682518	0.92[EUR][1000 genomes]
rs683826	0.92[EUR][1000 genomes]
rs725904	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9371441	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150731000-150735200	Weak transcription	NHEK	skin
2	chr6:150731000-150739000	Weak transcription	Hela-S3	cervix
3	chr6:150731200-150740200	Weak transcription	Spleen	Spleen
4	chr6:150732000-150740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:150732200-150739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:150732800-150739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:150733600-150738800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:150734800-150735200	Enhancers	Fetal Muscle Trunk	muscle
9	chr6:150734800-150735200	Enhancers	Fetal Stomach	stomach
10	chr6:150734800-150735200	Flanking Active TSS	Stomach Mucosa	stomach
11	chr6:150735000-150735600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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