Variant report

Variant	rs651646
Chromosome Location	chr11:71929526-71929527
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71928745..71931355-chr11:71933643..71936077,2	MCF-7	breast:
2	chr11:71927693..71930362-chr11:71935799..71938358,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3016432	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes]
rs514933	0.84[YRI][hapmap]
rs630074	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs651933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv897908	chr11:71927468-71956890	ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897909	chr11:71927468-71960554	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71927400-71929600	Enhancers	K562	blood
2	chr11:71927400-71930400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:71927600-71929800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:71927600-71930000	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:71927800-71929600	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
6	chr11:71927800-71929800	Enhancers	Primary B cells from cord blood	blood
7	chr11:71927800-71930000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:71927800-71930000	Active TSS	Placenta	Placenta
9	chr11:71927800-71930400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:71928000-71933600	Weak transcription	Pancreas	Pancrea
11	chr11:71928400-71930000	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:71928400-71930000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:71928800-71929600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:71929000-71929800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
15	chr11:71929000-71929800	Enhancers	Spleen	Spleen
16	chr11:71929200-71929800	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr11:71929400-71929600	Enhancers	Colonic Mucosa	Colon
18	chr11:71929400-71929800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:71929400-71930000	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr11:71929400-71930000	Active TSS	Fetal Muscle Trunk	muscle
21	chr11:71929400-71933000	Weak transcription	Fetal Thymus	thymus
22	chr11:71929400-71933200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:71929400-71933400	Weak transcription	Primary T cells from cord blood	blood

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