Variant report

Variant	rs6517523
Chromosome Location	chr21:40557332-40557333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr21:40554879-40557680	GM12878	blood:	n/a	n/a
2	POLR2A	chr21:40554825-40571524	K562	blood:	n/a	n/a
3	ZNF384	chr21:40556943-40557417	K562	blood:	n/a	n/a
4	IRF1	chr21:40555124-40557395	K562	blood:	n/a	chr21:40555524-40555538 chr21:40555918-40555931 chr21:40555918-40555938 chr21:40555450-40555464 chr21:40555811-40555825 chr21:40555418-40555432 chr21:40555402-40555416 chr21:40555855-40555869

No.	Distal block	Cell Line	Cell type
1	chr21:40552682..40557546-chr21:40815502..40820280,12	K562	blood:
2	chr21:40553821..40557385-chr21:40719764..40724370,6	K562	blood:
3	chr21:40556483..40559803-chr21:40580058..40583280,3	K562	blood:
4	chr21:40554013..40557423-chr21:40684520..40688084,3	MCF-7	breast:
5	chr21:40554663..40558370-chr21:40719503..40722190,4	MCF-7	breast:
6	chr21:40175328..40180167-chr21:40553641..40558387,7	K562	blood:
7	21:40557191-40559845..21:40757151-40764378	GM12878	blood:
8	chr21:40553454..40557456-chr21:40682892..40687176,12	K562	blood:
9	chr21:40551398..40560769-chr21:40565658..40576445,18	K562	blood:

Variant related genes	Relation type
PSMG1	TF binding region
ENSG00000157578	Chromatin interaction
ENSG00000205581	Chromatin interaction
ENSG00000157557	Chromatin interaction
ENSG00000238141	Chromatin interaction
ENSG00000255568	Chromatin interaction
ENSG00000185437	Chromatin interaction
ENSG00000182093	Chromatin interaction
ENSG00000185658	Chromatin interaction

Extended variants
information (count: 142 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1041440	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10427502	0.84[AMR][1000 genomes]
rs1065242	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11088471	0.95[YRI][hapmap]
rs11910151	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911112	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11911149	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12151994	0.82[AMR][1000 genomes]
rs12481860	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12482156	0.91[EUR][1000 genomes]
rs12482181	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12482857	0.91[EUR][1000 genomes]
rs12483216	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12710453	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13047550	0.92[EUR][1000 genomes]
rs13048178	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13049280	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13052882	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339986	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13625	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs14194	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1541102	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1571709	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1888488	0.92[ASW][hapmap];0.86[YRI][hapmap]
rs1984022	0.95[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2026265	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2026267	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs2037925	0.92[ASW][hapmap];0.86[YRI][hapmap]
rs2142111	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs2150413	0.85[ASW][hapmap];0.89[YRI][hapmap]
rs2150414	0.85[ASW][hapmap];0.89[YRI][hapmap]
rs2150415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2234543	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245455	0.92[ASW][hapmap];0.81[YRI][hapmap]
rs2249651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2410123	0.92[ASW][hapmap];0.96[YRI][hapmap]
rs2735306	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs2776307	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs2776309	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2836920	0.80[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs2836921	0.92[EUR][1000 genomes]
rs2836923	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2836924	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2836925	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2836927	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2836928	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2836929	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2836932	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2836933	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836938	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836944	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2836953	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2836956	0.85[ASW][hapmap];0.89[YRI][hapmap]
rs2836957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2836958	0.85[ASW][hapmap];0.89[YRI][hapmap]
rs2836964	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2836965	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2836967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2836968	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2836972	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2836973	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2836974	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs2836975	0.84[MEX][hapmap]
rs2836977	0.86[AMR][1000 genomes]
rs2836981	0.92[ASW][hapmap];0.85[YRI][hapmap]
rs2836982	0.92[ASW][hapmap];0.85[YRI][hapmap]
rs2836985	0.85[ASW][hapmap]
rs2836986	0.96[YRI][hapmap]
rs2836987	0.92[ASW][hapmap];0.96[YRI][hapmap]
rs2836988	0.92[ASW][hapmap];0.86[YRI][hapmap]
rs34035316	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34176878	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34294410	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34394827	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34433511	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34478864	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34592564	0.92[EUR][1000 genomes]
rs34672724	0.86[AMR][1000 genomes]
rs34978594	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35064900	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35068861	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35386515	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35391055	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35560196	0.86[AMR][1000 genomes]
rs35571600	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35774464	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36113648	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3945	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428602	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs4624474	0.92[ASW][hapmap];0.86[YRI][hapmap]
rs4817996	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4818015	0.84[MEX][hapmap]
rs55836299	0.86[AMR][1000 genomes]
rs56049536	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56112725	0.81[EUR][1000 genomes]
rs56306759	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6517513	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6517514	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6517519	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6517521	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6517526	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6517527	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6517533	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6517538	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66465538	0.81[EUR][1000 genomes]
rs68004583	0.84[AMR][1000 genomes]
rs68090597	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71184665	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7277978	0.82[AMR][1000 genomes]
rs7278297	0.89[YRI][hapmap]
rs7280375	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7281853	0.92[ASW][hapmap];0.85[YRI][hapmap]
rs7282624	0.86[AMR][1000 genomes]
rs7283516	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes]
rs7283569	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73221174	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221193	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7354783	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8127087	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8128026	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8128102	0.96[CEU][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8128191	0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8128620	0.86[AMR][1000 genomes]
rs8128734	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8128894	0.86[AMR][1000 genomes]
rs8129355	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8129416	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8130556	0.92[EUR][1000 genomes]
rs8130984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8131965	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8132285	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8132295	0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8132333	0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8132419	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8132568	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8133146	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8134733	0.84[AMR][1000 genomes]
rs9941894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs9981301	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061831	chr21:40376316-40583555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv544443	chr21:40376316-40583555	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs6517523	BRWD1	cis	parietal	SCAN
rs6517523	PSMG1	cis	Muscle Skeletal	GTEx
rs6517523	PSMG1	cis	Esophagus Mucosa	GTEx
rs6517523	PSMG1	cis	parietal	SCAN
rs6517523	HMGN1	cis	multi-tissue	Pritchard
rs6517523	PSMG1	cis	lymphoblastoid	seeQTL
rs6517523	DSCR3	cis	cerebellum	SCAN
rs6517523	BRWD1	cis	cerebellum	SCAN
rs6517523	PSMG1	cis	Artery Tibial	GTEx
rs6517523	HMGN1	cis	lymphoblastoid	seeQTL
rs6517523	PIGP	cis	parietal	SCAN
rs6517523	PSMG1	cis	Skin Sun Exposed Lower leg	GTEx
rs6517523	PSMG1	cis	lung	GTEx
rs6517523	CLIC6	cis	parietal	SCAN
rs6517523	DSCR2	cis	normal skin	skin_eQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40556200-40562600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr21:40556200-40567800	Weak transcription	Left Ventricle	heart
3	chr21:40556200-40568600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr21:40556200-40568800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:40556200-40570200	Weak transcription	Stomach Mucosa	stomach
6	chr21:40556200-40570800	Weak transcription	Small Intestine	intestine
7	chr21:40556200-40571000	Weak transcription	Lung	lung
8	chr21:40556200-40571200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr21:40556200-40576600	Weak transcription	Esophagus	oesophagus
10	chr21:40556200-40576600	Weak transcription	Pancreas	Pancrea
11	chr21:40556200-40602600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr21:40556400-40566000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr21:40556400-40568400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr21:40556400-40568400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr21:40556400-40568800	Weak transcription	Psoas Muscle	Psoas
16	chr21:40556400-40571000	Weak transcription	Ovary	ovary
17	chr21:40556600-40558200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr21:40556600-40558200	Weak transcription	HSMMtube	muscle
19	chr21:40556600-40558800	Weak transcription	HSMM	muscle
20	chr21:40556600-40561800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr21:40556600-40563000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr21:40556600-40563000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr21:40556600-40563000	Weak transcription	Placenta	Placenta
24	chr21:40556600-40564600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr21:40556600-40565400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr21:40556600-40565800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr21:40556600-40565800	Weak transcription	Fetal Thymus	thymus
28	chr21:40556600-40566000	Weak transcription	Fetal Brain Female	brain
29	chr21:40556600-40566400	Weak transcription	Fetal Muscle Leg	muscle
30	chr21:40556600-40566600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr21:40556600-40566800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr21:40556600-40567400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr21:40556600-40568200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr21:40556600-40568200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr21:40556600-40568200	Weak transcription	Brain Angular Gyrus	brain
36	chr21:40556600-40568200	Weak transcription	Brain Germinal Matrix	brain
37	chr21:40556600-40568200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr21:40556600-40568200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr21:40556600-40568400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr21:40556600-40568600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr21:40556600-40568800	Weak transcription	Aorta	Aorta
42	chr21:40556600-40570400	Weak transcription	Colonic Mucosa	Colon
43	chr21:40556600-40571000	Weak transcription	Fetal Stomach	stomach
44	chr21:40556600-40576600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr21:40556800-40558000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr21:40556800-40558000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr21:40556800-40558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr21:40556800-40558400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr21:40556800-40561800	Weak transcription	NH-A	brain
50	chr21:40556800-40563400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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