Variant report

Variant	rs651933
Chromosome Location	chr11:71926660-71926661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr11:71926578-71926877	K562	blood:	n/a	n/a
2	IRF1	chr11:71926578-71926916	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:71926616-71926666	HRCEpiC	kidney:	n/a
2	chr11:71926616-71926666	AG04450	lung:	fetal
3	chr11:71926616-71926666	HEK293	kidney:	embryo
4	chr11:71926616-71926666	Jurkat	blood:	n/a
5	chr11:71926616-71926666	HPAEpiC	pulmonary alveolar:	n/a
6	chr11:71926616-71926666	BE2_C	brain:	n/a
7	chr11:71926616-71926666	A549	lung:	n/a
8	chr11:71926616-71926666	GM12878	blood:	n/a
9	chr11:71926616-71926666	NB4	blood:	n/a
10	chr11:71926616-71926666	HL-60	blood:	n/a
11	chr11:71926616-71926666	U87	brain:	n/a
12	chr11:71926616-71926666	MCF-7	breast:	n/a
13	chr11:71926616-71926666	HNPCEpiC	eye:	n/a
14	chr11:71926616-71926666	HAEpiC	amniotic membrane:	n/a
15	chr11:71926616-71926666	PFSK-1	brain:	n/a
16	chr11:71926616-71926666	Caco-2	colon:	n/a
17	chr11:71926616-71926666	GM19239	blood:	n/a
18	chr11:71926616-71926666	GM06990	blood:	n/a
19	chr11:71926616-71926666	HCPEpiC	choroid plexus:	n/a
20	chr11:71926616-71926666	HepG2	liver:	n/a
21	chr11:71926616-71926666	SAEC	small airway:	n/a
22	chr11:71926616-71926666	AoSMC	blood vessel:	n/a
23	chr11:71926616-71926666	CMK	blood:	n/a
24	chr11:71926616-71926666	RPTEC	kidney:	n/a
25	chr11:71926616-71926666	Hepatocyte	liver:	n/a
26	chr11:71926616-71926666	H1-hESC	embryonic stem cell:	embryo
27	chr11:71926616-71926666	AG09309	skin:	n/a
28	chr11:71926616-71926666	HCM	heart:	n/a
29	chr11:71926616-71926666	HIPEpiC	eye:	n/a
30	chr11:71926616-71926666	HRE	kidney:	n/a
31	chr11:71926616-71926666	Hela-S3	cervix:	n/a
32	chr11:71926616-71926666	GM12891	blood:	n/a
33	chr11:71926616-71926666	MCF10A-Er-Src	breast:	n/a
34	chr11:71926616-71926666	IMR90	lung:	fetal
35	chr11:71926616-71926666	BJ	skin:	n/a
36	chr11:71926616-71926666	NH-A	brain:	n/a
37	chr11:71926616-71926666	AG10803	skin:	n/a
38	chr11:71926616-71926666	LNCaP	prostate:	n/a
39	chr11:71926616-71926666	PrEC	prostate:	n/a
40	chr11:71926616-71926666	GM12892	blood:	n/a
41	chr11:71926616-71926666	PANC-1	pancreas:	n/a
42	chr11:71926616-71926666	HCT-116	colon:	n/a
43	chr11:71926616-71926666	HCF	heart:	n/a
44	chr11:71926616-71926666	HMEC	breast:	n/a
45	chr11:71926616-71926666	HUVEC	blood vessel:	n/a
46	chr11:71926616-71926666	AG09319	gingival:	n/a
47	chr11:71926616-71926666	NHBE	bronchial:	n/a
48	chr11:71926616-71926666	HRPEpiC	eye:	n/a
49	chr11:71926616-71926666	SK-N-MC	brain:	n/a
50	chr11:71926616-71926666	ProgFib	skin:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71925702..71927384-chr11:71938361..71940751,2	MCF-7	breast:

No data

Variant related genes	Relation type
FOLR2	TF binding region
FOLR2	CpG island
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11235462	0.81[CHD][hapmap]
rs3016432	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs514933	0.81[LWK][hapmap];0.87[YRI][hapmap]
rs630074	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs651646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs651933	NUMA1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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