Variant report
| Variant | rs652303 |
|---|---|
| Chromosome Location | chr11:59970047-59970048 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1151119 | 0.87[EUR][1000 genomes] |
| rs1285231 | 0.87[EUR][1000 genomes] |
| rs474123 | 0.80[EUR][1000 genomes] |
| rs584469 | 0.87[EUR][1000 genomes] |
| rs588084 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs592894 | 0.84[EUR][1000 genomes] |
| rs599862 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs600550 | 0.86[EUR][1000 genomes] |
| rs603568 | 0.87[EUR][1000 genomes] |
| rs604085 | 0.87[EUR][1000 genomes] |
| rs612738 | 0.87[EUR][1000 genomes] |
| rs620612 | 0.87[EUR][1000 genomes] |
| rs621965 | 0.87[EUR][1000 genomes] |
| rs633463 | 0.87[EUR][1000 genomes] |
| rs650943 | 0.87[EUR][1000 genomes] |
| rs657928 | 0.87[EUR][1000 genomes] |
| rs664034 | 0.83[EUR][1000 genomes] |
| rs666555 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs668287 | 0.88[EUR][1000 genomes] |
| rs670139 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs670854 | 0.87[EUR][1000 genomes] |
| rs673996 | 0.84[EUR][1000 genomes] |
| rs675655 | 0.83[EUR][1000 genomes] |
| rs676309 | 0.87[EUR][1000 genomes] |
| rs678384 | 0.87[EUR][1000 genomes] |
| rs688460 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv468579 | chr11:59814287-59975400 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv555150 | chr11:59814287-59975400 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv832174 | chr11:59909267-60073908 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:59969400-59971800 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
| 2 | chr11:59969400-59972000 | Strong transcription | Primary monocytes fromperipheralblood | blood |
