Variant report

Variant	rs652354
Chromosome Location	chr11:59923991-59923992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs107903	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10897009	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11230147	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs11230153	0.86[EUR][1000 genomes]
rs11230155	0.87[EUR][1000 genomes]
rs11230160	0.81[CEU][hapmap]
rs11230161	0.82[CEU][hapmap]
rs1125357	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11600716	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs12226022	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1303615	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1303621	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441586	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17528859	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs17529983	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs1786137	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1813217	0.81[EUR][1000 genomes]
rs2070970	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2165525	0.87[EUR][1000 genomes]
rs2583471	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2583476	0.80[EUR][1000 genomes]
rs2847655	0.82[CEU][hapmap]
rs2847663	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2847664	0.81[EUR][1000 genomes]
rs2847666	0.82[CEU][hapmap]
rs2847667	0.93[CEU][hapmap]
rs2847668	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2855017	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs476722	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs483629	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs487997	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4939311	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs4939312	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs4939314	0.87[EUR][1000 genomes]
rs502419	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs502581	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs504272	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs510518	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs512495	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs514266	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs516478	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs521952	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs525794	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs534273	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs540170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs555635	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs556917	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55847558	0.86[EUR][1000 genomes]
rs563803	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs564912	0.93[CEU][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs569046	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs574695	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs574704	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs574798	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs580064	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs580817	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs581133	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs583296	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs583791	0.89[CEU][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs595481	0.96[CEU][hapmap]
rs602396	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs606588	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs610932	0.89[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs617135	0.81[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes]
rs617916	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs61901691	0.84[EUR][1000 genomes]
rs624663	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs631853	0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs632185	0.89[CEU][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs634475	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs636147	0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs662196	0.89[CEU][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs667897	0.80[CEU][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs684961	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs688030	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7124974	0.84[EUR][1000 genomes]
rs920573	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs983392	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv33843	chr11:59908131-59945334	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59923000-59924000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59923200-59924000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:59923200-59924000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:59923400-59924000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:59923800-59924000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:59923800-59924000	Enhancers	HUVEC	blood vessel

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