Variant report

Variant	rs6527061
Chromosome Location	chrX:31160188-31160189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12391957	1.00[CEU][hapmap];0.80[TSI][hapmap]
rs12557265	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs12557283	1.00[CEU][hapmap]
rs12687954	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs1484854	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1484855	0.83[CEU][hapmap];0.88[TSI][hapmap]
rs1921383	0.88[CHB][hapmap]
rs1921385	1.00[CEU][hapmap]
rs1921386	1.00[CEU][hapmap]
rs1921394	0.89[CEU][hapmap]
rs1921395	1.00[CEU][hapmap]
rs2178538	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs2404495	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs2404496	1.00[CEU][hapmap];0.80[TSI][hapmap]
rs2404497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[TSI][hapmap]
rs2896876	1.00[CEU][hapmap]
rs3747385	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.94[TSI][hapmap]
rs3788887	0.91[CEU][hapmap]
rs426228	0.82[CEU][hapmap]
rs436628	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs4397574	1.00[CEU][hapmap]
rs4829210	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs5926986	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs5927688	0.87[TSI][hapmap]
rs5927689	0.91[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs5972325	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs5972328	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[TSI][hapmap]
rs6527062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs6653848	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7057738	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs9988310	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3416705	chrX:31099481-31213379	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31134000-31188200	Weak transcription	Aorta	Aorta
2	chrX:31135800-31163800	Weak transcription	Rectal Smooth Muscle	rectum
3	chrX:31135800-31182800	Weak transcription	Pancreas	Pancrea
4	chrX:31137200-31183000	Weak transcription	Gastric	stomach
5	chrX:31137800-31165200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chrX:31140200-31227600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chrX:31140400-31170200	Strong transcription	Hela-S3	cervix
8	chrX:31140600-31206000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chrX:31141400-31167000	Weak transcription	Right Ventricle	heart
10	chrX:31142000-31236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chrX:31142800-31165600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chrX:31143800-31161600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:31144200-31162400	Weak transcription	Left Ventricle	heart
14	chrX:31144200-31165200	Weak transcription	Brain Hippocampus Middle	brain
15	chrX:31144800-31161800	Weak transcription	Ovary	ovary
16	chrX:31145400-31165400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chrX:31150400-31163000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chrX:31151600-31183400	Weak transcription	HepG2	liver
19	chrX:31155600-31165200	Weak transcription	Fetal Stomach	stomach
20	chrX:31156400-31161800	Weak transcription	HSMMtube	muscle
21	chrX:31156400-31162400	Weak transcription	Lung	lung
22	chrX:31156400-31164200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chrX:31156400-31165400	Weak transcription	Fetal Muscle Trunk	muscle
24	chrX:31156400-31166800	Weak transcription	Colon Smooth Muscle	Colon
25	chrX:31156400-31167000	Weak transcription	Brain Anterior Caudate	brain
26	chrX:31156400-31187800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chrX:31156600-31162000	Weak transcription	Adipose Nuclei	Adipose
28	chrX:31156600-31162200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chrX:31156600-31164000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chrX:31156600-31164200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chrX:31156600-31164400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chrX:31156600-31165800	Weak transcription	NH-A	brain
33	chrX:31156600-31166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chrX:31156600-31166800	Weak transcription	Stomach Smooth Muscle	stomach
35	chrX:31156600-31167800	Strong transcription	Liver	Liver
36	chrX:31156800-31224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chrX:31157000-31162400	Weak transcription	Fetal Muscle Leg	muscle
38	chrX:31157000-31164000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chrX:31157200-31174000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chrX:31157200-31175200	Weak transcription	Fetal Intestine Small	intestine
41	chrX:31157200-31182800	Weak transcription	Fetal Intestine Large	intestine
42	chrX:31159600-31164400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chrX:31160000-31161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chrX:31160000-31165200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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