Variant report

Variant	rs6531830
Chromosome Location	chr4:86471688-86471689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11940831	1.00[EUR][1000 genomes]
rs11945019	1.00[EUR][1000 genomes]
rs11945092	1.00[EUR][1000 genomes]
rs1540595	1.00[EUR][1000 genomes]
rs17010293	1.00[EUR][1000 genomes]
rs17010307	1.00[EUR][1000 genomes]
rs17010314	1.00[EUR][1000 genomes]
rs17010316	1.00[EUR][1000 genomes]
rs17010318	1.00[EUR][1000 genomes]
rs17010319	1.00[EUR][1000 genomes]
rs17010334	1.00[EUR][1000 genomes]
rs17010362	1.00[EUR][1000 genomes]
rs17010364	1.00[EUR][1000 genomes]
rs17010389	1.00[EUR][1000 genomes]
rs17010470	1.00[MEX][hapmap]
rs17010502	1.00[MEX][hapmap]
rs17010510	1.00[MEX][hapmap]
rs1982700	1.00[EUR][1000 genomes]
rs1994062	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1994064	1.00[EUR][1000 genomes]
rs1994066	1.00[EUR][1000 genomes]
rs2086534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3919901	1.00[EUR][1000 genomes]
rs4391024	1.00[EUR][1000 genomes]
rs4440206	1.00[EUR][1000 genomes]
rs4693705	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55829810	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58366517	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61658381	1.00[EUR][1000 genomes]
rs6531829	1.00[EUR][1000 genomes]
rs6531831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6531833	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6814596	1.00[EUR][1000 genomes]
rs6819986	1.00[EUR][1000 genomes]
rs6820735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6820899	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6820911	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6821419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6836668	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6842625	1.00[EUR][1000 genomes]
rs6847070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6851965	1.00[MEX][hapmap]
rs7671915	1.00[EUR][1000 genomes]
rs7685580	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86454000-86476600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:86454600-86471800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:86454800-86471800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:86461000-86476600	Weak transcription	Left Ventricle	heart
5	chr4:86464600-86476400	Weak transcription	Gastric	stomach
6	chr4:86465000-86473000	Weak transcription	HSMM	muscle
7	chr4:86466800-86480600	Weak transcription	Esophagus	oesophagus
8	chr4:86470200-86476200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:86471400-86473400	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links