Variant report

Variant	rs6531935
Chromosome Location	chr4:87760103-87760104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1868244	0.82[TSI][hapmap]
rs2121871	0.84[TSI][hapmap]
rs6820439	0.88[ASN][1000 genomes]
rs6843070	0.82[TSI][hapmap]
rs6846822	0.82[TSI][hapmap]
rs7678571	1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
2	chr4:87752600-87764400	Weak transcription	Adipose Nuclei	Adipose
3	chr4:87753000-87765600	Weak transcription	Esophagus	oesophagus
4	chr4:87753000-87766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:87753200-87762000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:87756400-87761800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:87756400-87762200	Weak transcription	NHDF-Ad	bronchial
8	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:87758600-87760400	Genic enhancers	NHEK	skin
10	chr4:87758800-87761800	Enhancers	Fetal Lung	lung
11	chr4:87759000-87768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:87759600-87760400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:87759600-87760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:87759600-87760600	Weak transcription	HMEC	breast
15	chr4:87759600-87762200	Weak transcription	NHLF	lung
16	chr4:87759600-87762400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:87759800-87760800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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