Variant report

Variant	rs6533779
Chromosome Location	chr4:79484451-79484452
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79476370..79478643-chr4:79482902..79485016,2	K562	blood:
2	chr4:79481834..79484233-chr4:79484393..79486934,3	K562	blood:
3	chr4:79481834..79483638-chr4:79484393..79486934,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10018015	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019438	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28454015	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7660496	1.00[AMR][1000 genomes]
rs7682725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79473400-79485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:79473600-79487200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:79474400-79486600	Weak transcription	Psoas Muscle	Psoas
4	chr4:79474400-79527200	Weak transcription	Spleen	Spleen
5	chr4:79474600-79488200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:79476800-79486600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:79478800-79484800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:79478800-79489800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:79481400-79484600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:79481600-79484600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:79481600-79484600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:79481800-79521000	Weak transcription	Right Ventricle	heart
13	chr4:79482400-79486400	Weak transcription	Lung	lung
14	chr4:79482400-79494800	Weak transcription	Left Ventricle	heart
15	chr4:79482600-79487200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:79482600-79487200	Weak transcription	Placenta	Placenta
17	chr4:79482600-79488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:79482600-79490600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:79482800-79486600	Weak transcription	Right Atrium	heart
20	chr4:79482800-79486800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:79482800-79488000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:79482800-79490800	Weak transcription	Fetal Stomach	stomach
23	chr4:79482800-79505000	Weak transcription	Fetal Lung	lung
24	chr4:79483000-79484600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr4:79483000-79485000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:79483000-79485400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:79483000-79485600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:79483000-79486200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr4:79483000-79486600	Weak transcription	Esophagus	oesophagus
30	chr4:79483000-79486800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:79483000-79487000	Weak transcription	Fetal Heart	heart
32	chr4:79483000-79487000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr4:79483000-79488000	Weak transcription	Pancreas	Pancrea
34	chr4:79483000-79489800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:79483000-79490600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:79483000-79490600	Weak transcription	Aorta	Aorta
37	chr4:79483000-79493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:79483000-79530000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:79483200-79485200	Weak transcription	HSMMtube	muscle
40	chr4:79483200-79485600	Weak transcription	Fetal Intestine Large	intestine
41	chr4:79483200-79486800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr4:79483400-79486800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:79483400-79486800	Weak transcription	HepG2	liver
44	chr4:79483400-79487000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:79483600-79484600	Enhancers	Placenta Amnion	Placenta Amnion
46	chr4:79483600-79485000	Weak transcription	HUVEC	blood vessel
47	chr4:79483600-79485200	Weak transcription	HSMM	muscle
48	chr4:79483600-79486600	Weak transcription	NHLF	lung
49	chr4:79483600-79486800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr4:79483600-79486800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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