Variant report

Variant	rs6537038
Chromosome Location	chr4:142166712-142166713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10002917	0.81[JPT][hapmap]
rs10017471	0.81[JPT][hapmap]
rs6537040	0.84[EUR][1000 genomes]
rs6537041	0.88[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs6858219	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142155400-142167400	Weak transcription	K562	blood
2	chr4:142156000-142166800	Weak transcription	NHDF-Ad	bronchial
3	chr4:142156600-142166800	Weak transcription	NH-A	brain
4	chr4:142156800-142166800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:142156800-142167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:142157000-142167000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:142157200-142167000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:142157200-142167000	Weak transcription	Adipose Nuclei	Adipose
9	chr4:142157200-142167200	Weak transcription	Fetal Heart	heart
10	chr4:142157200-142167400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:142166600-142166800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:142166600-142167000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:142166600-142167200	Enhancers	NHLF	lung
14	chr4:142166600-142167400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:142166600-142169200	Enhancers	HSMMtube	muscle
16	chr4:142166600-142169400	Enhancers	HSMM	muscle
17	chr4:142166600-142169400	Enhancers	Osteobl	bone
18	chr4:142166600-142169600	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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