Variant report

Variant	rs6537123
Chromosome Location	chr4:143607404-143607405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1031104	0.81[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10857397	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11100752	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1116690	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11723809	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11942731	0.82[YRI][hapmap]
rs11943397	0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11944455	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12233703	0.87[ASN][1000 genomes]
rs12500698	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12508480	0.87[ASN][1000 genomes]
rs13102191	0.86[ASN][1000 genomes]
rs13109603	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13109664	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13114452	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13119090	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13125853	0.89[ASN][1000 genomes]
rs13133181	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13149611	0.82[CHB][hapmap]
rs1364921	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1364922	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1364925	0.92[CHB][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs1373041	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1443185	0.80[ASN][1000 genomes]
rs1443186	0.80[ASN][1000 genomes]
rs1443187	0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs1443188	0.86[ASN][1000 genomes]
rs1443190	0.82[CHB][hapmap]
rs1443191	0.85[CHB][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17016514	0.83[CHB][hapmap]
rs17016768	0.92[JPT][hapmap]
rs1899565	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1961836	0.87[ASN][1000 genomes]
rs2017146	0.92[CHB][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2083781	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2120158	0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2120159	0.83[CHB][hapmap]
rs2165820	0.85[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2197216	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2217017	0.86[ASN][1000 genomes]
rs2874870	0.91[CHB][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2874871	0.84[CHB][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs331945	0.92[JPT][hapmap]
rs4690698	0.81[JPT][hapmap]
rs6537129	0.81[CHB][hapmap]
rs6830053	0.82[CEU][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6830886	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6831966	0.83[ASN][1000 genomes]
rs6839158	0.82[CHB][hapmap]
rs6839894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7376422	0.83[CHB][hapmap]
rs7434705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7437824	0.87[ASN][1000 genomes]
rs7441478	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7666140	0.92[JPT][hapmap]
rs7671783	0.82[CHB][hapmap]
rs7675305	0.82[CHB][hapmap]
rs7680076	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7680631	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7682731	0.82[CHB][hapmap]
rs7685086	0.86[ASN][1000 genomes]
rs7688435	0.82[CHB][hapmap]
rs7695514	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7698691	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs978361	0.86[ASN][1000 genomes]
rs979194	0.95[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979195	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979196	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143585600-143613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143595400-143609000	Weak transcription	Aorta	Aorta
3	chr4:143606200-143607800	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:143606600-143607600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143607000-143607800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143607200-143612000	Enhancers	Fetal Heart	heart
7	chr4:143607400-143607600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr4:143607400-143607600	Enhancers	Left Ventricle	heart
9	chr4:143607400-143607800	Enhancers	Dnd41	blood
10	chr4:143607400-143608000	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links