Variant report

Variant	rs6537127
Chromosome Location	chr4:143737358-143737359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143728679..143731015-chr4:143735952..143738151,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10024696	0.83[EUR][1000 genomes]
rs10857399	0.83[EUR][1000 genomes]
rs11100754	0.85[EUR][1000 genomes]
rs11100760	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11100761	0.93[ASN][1000 genomes]
rs11933763	0.87[EUR][1000 genomes]
rs12640389	0.83[EUR][1000 genomes]
rs12644329	0.85[EUR][1000 genomes]
rs13112916	0.88[ASN][1000 genomes]
rs13117185	0.83[EUR][1000 genomes]
rs13122287	0.87[ASN][1000 genomes]
rs13141925	0.89[EUR][1000 genomes]
rs13145724	0.88[ASN][1000 genomes]
rs13435565	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1373031	0.83[EUR][1000 genomes]
rs1373032	0.87[EUR][1000 genomes]
rs1441418	0.93[ASN][1000 genomes]
rs1443183	0.83[EUR][1000 genomes]
rs1443185	0.85[EUR][1000 genomes]
rs1443186	0.85[EUR][1000 genomes]
rs1444950	0.89[ASN][1000 genomes]
rs1465962	0.83[EUR][1000 genomes]
rs17016777	0.84[EUR][1000 genomes]
rs17732791	0.80[EUR][1000 genomes]
rs179508	0.90[EUR][1000 genomes]
rs1822360	0.83[EUR][1000 genomes]
rs1822361	0.83[EUR][1000 genomes]
rs1838082	0.83[EUR][1000 genomes]
rs1867214	0.83[EUR][1000 genomes]
rs191762	0.89[EUR][1000 genomes]
rs1965828	0.83[EUR][1000 genomes]
rs1992417	0.81[EUR][1000 genomes]
rs1992418	0.81[EUR][1000 genomes]
rs2218240	0.88[ASN][1000 genomes]
rs2589994	0.83[EUR][1000 genomes]
rs28420913	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs331939	0.83[EUR][1000 genomes]
rs331940	0.82[EUR][1000 genomes]
rs331942	0.83[EUR][1000 genomes]
rs331948	0.90[EUR][1000 genomes]
rs331949	0.90[EUR][1000 genomes]
rs331950	0.90[EUR][1000 genomes]
rs331957	0.83[EUR][1000 genomes]
rs331963	0.90[EUR][1000 genomes]
rs331966	0.86[EUR][1000 genomes]
rs34442253	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4575951	0.88[ASN][1000 genomes]
rs4690699	0.86[EUR][1000 genomes]
rs4690726	0.83[EUR][1000 genomes]
rs4690728	0.88[ASN][1000 genomes]
rs6537124	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6537130	0.88[ASN][1000 genomes]
rs6811022	0.93[ASN][1000 genomes]
rs6813458	0.85[EUR][1000 genomes]
rs6816424	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6819498	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6831204	0.91[ASN][1000 genomes]
rs6831927	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6844306	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6845583	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6852570	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7660533	0.93[ASN][1000 genomes]
rs7667183	0.84[EUR][1000 genomes]
rs7670139	0.88[ASN][1000 genomes]
rs966457	0.90[EUR][1000 genomes]
rs9994364	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
2	chr4:143731800-143738400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:143732000-143744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:143732600-143738600	Weak transcription	Esophagus	oesophagus
5	chr4:143732600-143745000	Weak transcription	Left Ventricle	heart
6	chr4:143732600-143749600	Weak transcription	Right Ventricle	heart
7	chr4:143735000-143738400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:143735400-143738400	Weak transcription	Fetal Heart	heart
9	chr4:143735800-143738400	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:143736000-143740600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:143736200-143738400	Enhancers	NHDF-Ad	bronchial
12	chr4:143736400-143738600	Weak transcription	Small Intestine	intestine
13	chr4:143736400-143739000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:143736600-143737800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:143736600-143738400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:143736600-143739000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:143736600-143739000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:143736600-143739000	Enhancers	Osteobl	bone
19	chr4:143736800-143737400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:143736800-143738400	Enhancers	Hela-S3	cervix
21	chr4:143736800-143739000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:143736800-143739000	Enhancers	Primary hematopoietic stem cells	blood
23	chr4:143737000-143737400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:143737000-143737400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:143737000-143737600	Enhancers	NHLF	lung
26	chr4:143737000-143738400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:143737000-143738400	Enhancers	Dnd41	blood
28	chr4:143737000-143738400	Enhancers	HSMMtube	muscle
29	chr4:143737000-143738600	Enhancers	NH-A	brain
30	chr4:143737000-143739000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:143737000-143739000	Enhancers	HSMM	muscle
32	chr4:143737200-143737400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:143737200-143737400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:143737200-143737400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:143737200-143737400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:143737200-143737400	Enhancers	Stomach Smooth Muscle	stomach
37	chr4:143737200-143737400	Enhancers	HMEC	breast
38	chr4:143737200-143737800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr4:143737200-143738200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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