Variant report

Variant	rs6537536
Chromosome Location	chr10:50649753-50649754
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50641718..50643509-chr10:50649347..50652073,2	MCF-7	breast:
2	chr10:50648888..50650860-chr10:50652961..50655311,2	K562	blood:
3	chr10:50648534..50651045-chr10:50651718..50653272,2	MCF-7	breast:
4	chr10:50376986..50378609-chr10:50649744..50651324,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ERCC6-1	chr10:50641879-50655452	NONHSAT013306

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1018603	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs10745261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776572	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10776573	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10776577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857502	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101147	1.00[ASN][1000 genomes]
rs1475255	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17774510	1.00[ASN][1000 genomes]
rs1917800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924490	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1924492	1.00[ASN][1000 genomes]
rs2103201	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104346	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240509	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4253026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253073	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253077	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253087	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4253120	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4253132	1.00[ASN][1000 genomes]
rs4253162	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253164	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253179	1.00[ASN][1000 genomes]
rs4838523	1.00[ASN][1000 genomes]
rs4838524	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4838530	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57509152	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537538	1.00[ASN][1000 genomes]
rs7072383	0.91[EUR][1000 genomes]
rs7076173	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7080017	1.00[ASN][1000 genomes]
rs7091005	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72792895	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793798	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902661	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903788	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7903930	1.00[ASN][1000 genomes]
rs7916873	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923762	1.00[ASN][1000 genomes]
rs912470	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958967	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50635800-50649800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:50638400-50665800	Weak transcription	Gastric	stomach
3	chr10:50639000-50651800	Weak transcription	Aorta	Aorta
4	chr10:50645000-50650000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:50645800-50655200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:50647200-50650200	Weak transcription	Liver	Liver
7	chr10:50648000-50662200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:50648000-50662200	Weak transcription	Left Ventricle	heart
9	chr10:50648400-50662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:50648800-50650600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr10:50649000-50652400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:50649400-50649800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr10:50649400-50649800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr10:50649400-50649800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
15	chr10:50649400-50649800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:50649400-50650000	Enhancers	Fetal Thymus	thymus
17	chr10:50649400-50650200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:50649400-50650400	Enhancers	Placenta	Placenta
19	chr10:50649600-50649800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr10:50649600-50649800	Active TSS	Primary T cells from cord blood	blood
21	chr10:50649600-50649800	Enhancers	Primary hematopoietic stem cells	blood
22	chr10:50649600-50649800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:50649600-50649800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
24	chr10:50649600-50650000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:50649600-50650000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:50649600-50650000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:50649600-50650000	Active TSS	Esophagus	oesophagus
28	chr10:50649600-50650000	Active TSS	Thymus	Thymus
29	chr10:50649600-50650000	Active TSS	NH-A	brain
30	chr10:50649600-50650200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:50649600-50650200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr10:50649600-50650200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr10:50649600-50650200	Enhancers	Lung	lung
34	chr10:50649600-50650200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
35	chr10:50649600-50650400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:50649600-50650400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:50649600-50650400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr10:50649600-50650400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:50649600-50650400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:50649600-50650400	Enhancers	Placenta Amnion	Placenta Amnion
41	chr10:50649600-50650400	Enhancers	Spleen	Spleen
42	chr10:50649600-50650600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:50649600-50665600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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